Tarenaya hassleriana (spider flower): 104810010
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Entry
104810010 CDS
T04125
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104810010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thj03021
]
104810010
03041 Spliceosome [BR:
thj03041
]
104810010
03036 Chromosome and associated proteins [BR:
thj03036
]
104810010
Transcription machinery [BR:
thj03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104810010
Spliceosome [BR:
thj03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104810010
Complex B
104810010
Complex C
U2 SnRNP specific factors
104810010
Chromosome and associated proteins [BR:
thj03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
104810010
TFTC complex
104810010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
WD40_CDC20-Fz
Beta-prop_BBS7
Beta-prop_LRRK2
WDR55
Motif
Other DBs
NCBI-GeneID:
104810010
NCBI-ProteinID:
XP_010534467
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQQATGILCAINGNFSGGKTQEIVVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILDYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTICYSICGVDCGFDNPI
FASIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
ADGPSGVLVCAENFVIYKNQGQPDVRAVIPRRTDLPAERGVLVVSAATHKQKSMFFFLLQ
TEYGDIFKVTLDHDGDHVSELRIKYFDTIPVAASICVLKSGFLFAASEFGNHGLYQFQAI
GEEPDVESSSANLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGLPSAVWTVKKNVNDEFDAYIVVSFTSAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
SIVKVGYNRLQVVIALTGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTVRILSLDPDDCLQILSVQSVSAAPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSIAVRGRPAMLCLSSRPWLGYIH
QGHFQLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIERLGETFNETMIPLRYTP
RKFVLQPRRKLLVVIESDQGAFTAEEREAARKECFESAGMGENGNASSDQMENGADDDDK
EDPLSDEQYGYPKSESEKWVSCIRVLDPKTATTTCLLELQDNEAAFSICTVNFHDKEYGT
LLAVGTAKGLQFLPKKNVVAGFIHIYRFLDDGKSLELLHKTQVEGIPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCENKLFPNTVITIQTYRDRIYVGDIQESFHYCKYRRDENQLY
IFADDSVPRWLTASQQVDFDTMAGADKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIVQFHVGDVVTSLQKASMIPGGSECMIYGTVMGSLGALHAFTSRDDVDFFS
HLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPA
EILKKLEDVRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatttatacagtcttactctgcagcaggcgaccggaattctctgcgccatcaatggg
aacttctccggtgggaagacacaggagattgtcgttgcccgcggcaagattctagatctt
ctccgaccggacgagaacggtaagatccagacaatacactctgtcgaagtattcggtgca
attagatccctggctcagtttcggttaactggttcgcagaaggattatatcgttgtgggg
tctgattcgggtcgaattgtgatacttgattacaacaaggagaaaaatgttttcgacaaa
atacatcaggagacttttgggaagtcgggttgccgtagaatcgtgccgggtcagtacttg
gctattgaccccaaaggaagggccgttatgataggagcatgtgagaagcagaagcttgtg
tatgttttgaacagagatactgctgctaggttaacgatttcatcgccattggaggctcac
aagtctcacacgatatgctattctatctgtggtgtggattgtgggtttgataacccaatc
tttgcatctattgagcttgattactcagaggcagatcaggatccaactggtcaggctgcg
agtgaggctcagaagcatttgactttctacgagctcgatttggggctcaaccatgtctct
aggaaatggtccgagccagttgataacggcgccaatatgcttgtcactgttcccggagga
gccgatgggccaagtggagttttggtctgtgcagagaattttgtcatatacaaaaatcag
ggtcaaccagatgtgagagcagtaattcctagacgaactgatttgccagctgaacgaggg
gtgttagtagtttcagctgccacccataagcaaaagtccatgtttttctttctgttgcag
actgagtacggggatatttttaaggttactttggatcacgacggcgatcatgtctcagag
ctgaggatcaagtattttgacacaatccctgttgctgcttccatatgtgtactgaagtct
ggatttctctttgctgcttcggagtttggaaatcatggtttgtatcagttccaggctata
ggggaggagcctgacgtagagtcttcctcagctaatttaatggagactgaagaaggtttc
cagccagtattttttcaacctagaagactaaagaaccttgttaggatagaccaagttgag
agtctgatgccaattatggacatgaaagtcataaatcttttcgaggaagaaactcctcag
atcttttcactgtgtggacggggtccgcgttcttctctgaggattctgaggcctggtttg
gccatcagtgagatggctgtctcacagcttcctggactcccaagtgccgtatggacggtg
aaaaagaatgtcaatgatgaatttgatgcatacattgttgtctcttttaccagtgccact
cttgtgctttcaatcggtgaaacagtcgaagaagttagtgatagtggatttcttgacact
accccctcccttgctgtatccctgatcggtgatgattctctcatgcaagttcatcctaat
ggaattcgccacataagggaagatggccgtataaatgagtggagaactcccggcaagagg
tcaattgttaaagttggctataataggcttcaagtggtcattgcattgactggtggagag
ctaatttattttgaggcagatatgactggtcagctgatggaggtagagaaacatgaaatg
tctggggatgtagcatgcttggacattgccccggttcctgaaggaagacagagatctcgt
ttccttgccgtggggtcttacgataatactgttcgtattctatctttggatcccgatgac
tgtctgcagattcttagcgtgcaaagtgtctctgcagccccagaatctttgctattcctt
gaagttcaggcatctgttggtggagaggatggtgctgatcaccctgcaagcctcttcctt
aatgctggtttgcagaatggggttcttttcagaacggtagtggacatggtgacgggtcag
ctttctgattcccgttctcgatttctggggctgaagcctccaaagctgttttccattgct
gtgagaggccgccctgcaatgctgtgtttgtccagtcgaccttggcttggttatattcat
cagggacatttccagttgacacctctgtcttatgagactttggaatttgctgcccccttt
tcatctgatcaatgtgctgaaggtgttgtttctgttgctggggatgctcttagaattttt
atgattgaaagactcggagaaacatttaatgaaactatgattccgttaagatacacgcca
agaaagtttgttctccaacccaggcggaagttattggttgtcattgagagtgaccaggga
gcattcactgcagaagagcgtgaagcagcaagaaaagaatgttttgagtctgctggaatg
ggagaaaatggtaatgctagttcagatcagatggagaatggtgctgatgatgatgataag
gaagacccgctttctgatgagcagtatggttatccaaaatccgaatcagaaaaatgggtt
tcttgcatcagggtccttgatcctaagacggctactacaacatgtctcctggaacttcag
gataatgaagctgcatttagtatttgcacagtgaattttcatgataaggagtatggcacg
ttgttggctgttggtacggcaaagggactgcagttcttgcctaaaaagaatgttgtagcc
gggttcattcatatttacaggtttctggatgatggaaaatccctcgaacttcttcacaag
actcaagtagaaggtattcctcttgccttatgccaatttcagggaagactgctggctgga
ataggacctgttctcaggttgtatgacttggggaagaagagactgcttaggaaatgtgaa
aacaaactcttccccaacactgttatcaccatccagacttaccgtgatcgaatttatgtt
ggtgatatccaggagtctttccattactgcaagtacagacgggatgagaatcagctctac
atatttgctgatgactctgtacctagatggcttacagcgtcacagcaggtggatttcgac
accatggcaggtgcggataaattcgggaacatatattttgcaaggttgcctcaggattta
tctgatgagattgaagaagacccaactggtgggaaaatcaagtgggagcaaggaaagctg
aatggagcaccaaacaaagtggaggagattgtacagtttcatgtgggcgacgtggtgacg
agcttgcagaaagcctcgatgatcccgggtggatctgagtgcatgatttatggaacagtc
atgggtagtttgggggcattacatgctttcacgtcccgtgacgatgttgatttcttttct
catctggagatgcacctgaggcaagaacatcctcctctgtgtggaagagatcatatggct
tatcgatctgcatatttcccggtcaaggatgtaatagatggagatctttgcgagcagttc
ccaacactaccgatggacttgcagaggaaaatagcggacgagttggatagaactcctgcc
gagatactgaagaaactcgaagacgttaggaataagatcatctaa
DBGET
integrated database retrieval system
