Tarenaya hassleriana (spider flower): 104811594
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Entry
104811594 CDS
T04125
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
thj
Tarenaya hassleriana (spider flower)
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
thj03009
]
104811594
Ribosome biogenesis [BR:
thj03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
104811594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_DCAF12
PEP5_VPS11_N
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
VPS8_N
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_VPS8
WDR54
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
104811594
NCBI-ProteinID:
XP_010536634
LinkDB
All DBs
Position
Unknown
AA seq
408 aa
AA seq
DB search
MPGVRSPPPLELHAILSPPYSFLHHFKSNVCARARERERDGYRERWRELGERRWWCAAIT
VFDLDTAKGLLRVPGCAAAAHGPLFFSDHSLVASQVAKHGFVGSGSGSGSIITWPINKLR
SSRRSHTMEAIEPLCSTRDGAYLAAGDVSGNVHLWEVASGRLLKSWTAHRKSVKCMSFSD
DGSFLISGSDGGMIPICSMIRLLDIDDCGSFSALLHCSSEHSSSITGLLTITTSTRLKFV
SNSMDGSCKDSFLHERDRTVVLKGHNDSITALTFWKTGLISASNDCTVCIWDIESCKNIR
RFFHQKGPVTNLVTIPQSALYCRSDNGRGFDRRSQQESSATAMENKVETPVDRRRWAINM
AKHVVEMNRQIQLCLLEMMKLRLWTEEFQTSSVTNQRKKMKKTKKKSL
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcccggagttcggtcgccacctccacttgagctgcatgcgatcctttctcctccatat
tccttccttcaccacttcaaatcaaatgtgtgtgcgcgcgcgcgtgagagagagagggac
gggtacagagagagatggagagagctgggagagaggcggtggtggtgtgcggcgatcacg
gtgttcgacctcgacacggcgaaggggctcctccgcgtacctggctgcgccgcggcggct
cacggccccctctttttctccgatcactccctcgtcgcttctcaggtcgccaaacatggc
ttcgtcggctccggctccggctccggctccatcatcacttggcccatcaacaaactccgt
tcgtcgcgtagaagccatacgatggaggcaatagaacccctttgtagcacaagggacggt
gcttatttagctgcaggagacgtttcggggaacgtgcatctctgggaggttgcaagcggg
aggttgctcaaatcgtggaccgcccatcgtaaatctgtgaagtgcatgagtttttcagat
gatgggtcttttctaatctctggttctgatggtgggatgatcccgatttgctctatgatc
agattacttgatatcgatgattgcggaagcttctcggctttgctacattgttcttctgag
cactcgtcctccataactggtttactaactataactacatccacacgcttgaaattcgta
tcgaactccatggacggaagttgcaaggattcctttctccatgaacgagatcgaactgtt
gtgctgaaaggacacaacgactccataaccgcattgacgttctggaagacgggtctgata
tctgcatcaaacgattgcaccgtctgcatatgggatattgaaagctgcaaaaatatccgc
cggttcttccatcaaaagggaccagtgactaacctcgtaacaatacctcagtctgcgcta
tattgtcgatcagataacggaagaggcttcgatcggaggagccagcaagaaagctctgca
acagccatggaaaataaggtggaaacacccgtggaccgaagaagatgggcaataaacatg
gcgaaacatgtggtggagatgaacagacagatccagttgtgtttgttagagatgatgaag
ctgcggctttggacagaggagtttcagacaagttctgtgacaaaccagaggaagaagatg
aagaagacgaagaagaagagcttgtag
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