Tarenaya hassleriana (spider flower): 104812025
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Entry
104812025 CDS
T04125
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104812025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104812025
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
104812025
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_14
TPR_8
TPR_19
TPR_16
TPR_9
TPR_12
TPR_7
TPR_20
BTAD
TPR_NPHP3
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
104812025
NCBI-ProteinID:
XP_010537255
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MNQSEDDGGTVLQQLEKSVEANPDDPSLRFELGLYLWENGGDPEKAAECFVLSVKLNPEN
ATAFKYLGHYYSRVALDHLRAAKCYQRSVSLNPNDSDAGEALCDLFDREGKLSLELAVCR
DASEKSPKAFWAFARLGYIQLHQKKWSEAVQSLQHAIRGYPTVPDLWEALGVAYQRLGMF
TAAIKAYSRAIELDETRVFALVESANIFLMLGSYRKGVEQFEQALKILPKNSSVLYGLAS
GLLSWSKECVNLGAFRWAASLLEDARKVAKASSELASNMSSIWKLHGDIQLTYARCFPWS
AETEISEVDSKSFNDSVHAWRSTCSSAALSARASYQRALHLAPWQANIYTDIAIASDLIS
PLGEDCESSISWQLQEKMALGALLLECDNSEFWVALGCLSRHRALRLHALIRGLQLDVSL
AIAWAYMGQLFRQTDEMKLAKQAFDCARSIDPTLALPWAGSADVYARASIVDEAFESCLR
AAQISPIAEFQIGLAWLALLHGTLSSPQVFACIEQAVQHAPYSEPLNLHGLVCEARQNYQ
TAVTSYRLARAALTFYPANSLKSHDGEISINLARSLSKAGNFRDSVKECADLKLKGMLDD
KGLQIYAFSLWKIGENDLALLVVRDLAGRISTMEKTSIAFSVSFICRLLYSVSGLDSAIT
SIQKMPKDFFQSSKISFIVSAIHSLDQSDRLQSIVSSTRNYITMHEEIIAMHYLIALGKL
LKTGAGDSLGFDKGVAHLRKALHMYPHSNLLRKLLGYLLLAGEEMNDACTASRCSIINVS
ECTNKDDLKSALDVLGGGAVACNVIGNTAPRFSFPTCHCQCLNAPIVPVELQRFLHQEPW
NYGTRYLLILNLMQKAREQRFPRGLCGVIERLISVALSDEIYSEEGTSYGYQKLQLLLCA
SEISLKTRNIVASISHAQKASSLPLPDSYLFYGHLQLCRAYAAEGNTRNLQEEYESCLKL
KTDCNISWICLKLIAAQFDLQNDSSILELSLQECSKEKNLQKEWMALYNLGLGLVCIRKR
DFFSAEEFLAQACSLAKSESCVLLCHGVVCMELARQTNDSKFLSMAVKSLGKAQASSLVP
LPIVYSLLAQAQGSLGSKEKWEKNLRLEWFSWPPEMRPAELFFQMHILARQAQGRRPETG
TGVENFQSTEKWVLRAIHTNPSCQRYWSVLSKLIQ
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaatctgaagacgacggcgggacggtgttgcagcagctggagaaatccgtggag
gcgaacccagacgacccttctcttcgcttcgagctcggtttgtatctgtgggagaacggc
ggagatccagagaaagcggcggagtgtttcgtgctgtcggtgaagttgaacccggagaat
gcgacggcgttcaagtatctgggccattactactcacgagtggcgcttgatcatctccga
gctgctaagtgttatcagagatctgtctcgctgaaccctaacgattccgatgccggagaa
gctctctgcgatttgtttgacagagagggcaagctgagcttggaactcgcggtttgccgc
gatgcttctgagaaatctcctaaagctttctgggcatttgccagattgggttacattcag
cttcatcagaagaagtggtctgaagctgttcagagccttcagcatgcaattcgaggttat
cctaccgttcctgacttgtgggaagctctgggtgttgcttaccaaagacttggaatgttt
acggctgctatcaaggcatacagccgtgccatagaactagatgagaccagagtttttgcg
ctagttgagagtgcaaacatctttttgatgcttggttcatatagaaagggtgtggagcag
tttgagcaggcgctgaagattttgcctaagaactcatctgtactatatggtcttgcttct
ggactgcttagttggtcaaaagaatgtgtaaatttgggcgcatttagatgggcagcttca
ttattggaggatgctcgtaaagttgcaaaagctagtagtgagttagccagcaacatgtct
tctatatggaaattgcatggtgatattcagcttacgtatgcgagatgctttccatggtct
gcggaaactgaaatctcggaagttgattcaaagagttttaatgattcagttcatgcttgg
agaagtacttgctcctcagctgctttgtctgcgagagcttcttaccaacgggctctgcac
ttagccccttggcaagctaatatttataccgacatagccatagcttcagatctcatttcg
cctttaggagaggactgcgaaagctcaatttcttggcagcttcaagagaaaatggctttg
ggagctttgttactggagtgtgacaactctgagttctgggttgcgttgggttgtctatct
cgtcatagggctttgagattacatgctttgattcggggattgcaattagatgtatctctt
gccattgcttgggcatacatgggccagcttttcaggcagacagatgaaatgaaattggcg
aaacaggcttttgattgtgccagaagcatagatcctacacttgcgttaccatgggcaggc
tcagctgatgtgtatgctagggcatcaatagtcgatgaggcttttgagagctgcttacga
gctgcacaaatatcacccattgcagagttccaaattggtctggcatggctagctttgtta
catggtactctttcatctccacaggtttttgcttgcattgagcaggcagtgcagcatgct
ccttattccgaacctcttaatcttcacggcctagtctgtgaggcaagacagaactatcaa
accgctgttacttcctacaggctggcacgtgctgccttaacgttttatccagccaattct
ttaaaatctcatgatggggaaatatctattaacttagccagatcacttagcaaggcagga
aattttagagattcagtgaaggaatgtgcagatttgaagttaaaaggaatgcttgacgac
aagggcttgcaaatatatgctttctctctgtggaagattggtgaaaatgatttggctctc
ttggtggttagggatctggctggcagaatttctaccatggaaaaaacttcaatagcgttc
tcagtcagcttcatttgtaggctgctttattctgtgtcgggtttagattctgctatcacc
agcatccagaagatgccaaaagatttcttccagagttcgaaaattagctttattgtatcg
gcaatccattctcttgatcagagtgataggttgcaatcgattgtttcaagcacgcgtaac
tatataacaatgcacgaagagatcattgcaatgcactacttgatagcactcggcaaattg
ctgaaaactggtgccggagattcccttggatttgataagggggttgctcacctgagaaaa
gctcttcatatgtatcctcatagtaatttgttaaggaagctgctaggttatcttttgtta
gctggtgaagaaatgaatgatgcctgcaccgctagtagatgcagcatcataaatgtctct
gaatgtacaaataaagatgatctaaaatccgcattggatgtccttggaggaggggcagtg
gcctgcaatgttatcggtaatacagctccaaggttctcctttccgacttgccattgccag
tgtctgaatgctcctattgttcctgtagaactgcaaagatttttgcatcaagaaccttgg
aactatggtacaagatacttgctcatcctaaaccttatgcagaaagcacgcgagcagaga
tttcctcgagggctctgtggtgttattgaacggctgatctctgtggcactgtccgatgag
atatattctgaggaaggcacctcttacggatatcaaaagttacagcttctgctttgtgct
tctgagatcagtttgaaaactagaaatatagttgcctccatcagccatgctcaaaaggct
tcttcccttccccttcccgatagctacctgttttacggacatttgcaactatgccgtgct
tatgcagctgagggtaacaccagaaacctgcaagaagaatatgaatcatgtttgaagctc
aagaccgactgtaatatcagttggatatgcttgaagctcatagcagctcaattcgatctg
caaaatgattcaagtatcctggagctaagcctacaagaatgctcaaaggagaagaacttg
cagaaagagtggatggcattatacaatcttggtcttggcttagtttgtatccggaaacgg
gactttttctcagcagaggagttccttgcacaagcttgttcattggctaagtcagagagc
tgtgtacttctctgtcatggtgttgtctgcatggagctggcaaggcagactaatgactcg
aagttcttgtcaatggctgtgaagagccttggcaaggcacaagcgagttcactagtgccc
ttgcctattgtctactcgttgttggctcaagcacaaggaagtcttggttctaaagagaaa
tgggagaagaacctccgtctcgaatggttctcttggccaccagagatgagacctgcagag
ctcttcttccagatgcatatactcgcaaggcaagcacaagggcgacgtcccgagactgga
acaggcgtggagaatttccaaagtaccgagaaatgggtgcttcgggctattcacacaaac
ccttcttgtcaaagatactggagtgttttgtctaagcttatacaatga
DBGET
integrated database retrieval system
