Tarenaya hassleriana (spider flower): 104812747
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Entry
104812747 CDS
T04125
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104812747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
thj03041
]
104812747
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104812747
Spliceosome [BR:
thj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104812747
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
AAA_30
nSTAND3
T2SSE
nSTAND_NTPase5
PWI
Flavi_DEAD
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104812747
NCBI-ProteinID:
XP_010538373
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MGSNDLKTWVSDKLMVLLGYSQNAVVTYLIAKAKSSKSPTDLLNELAEYGFSSSSETRSF
AEEMYARVPRKVTGANLYKQQEAEAAMLVRKQKTYALLDADDEEDEDGGTIDQKRSSASE
TKKSDKGRKRFRKKSGHSEDDDDEVAVKDDDRQVKRRISQDEDDGSESEEERLRDQKERE
ELEQHLRDRDAARTRKLTEQKLSKKEQEEAVRRANALEEDDIGPLRKVSRQEYLKKREQK
KLDELRDEIEDEQYLFEGVKVTEAEIREYRHKKELYELLKKKTEDTDNVEEYRMPDAYDL
EGGVNQEKRFAVAVQRYRDLDASDKMNPFAEQEAWEDHQIGKATLNFGAKNKKQTSDDYQ
YVFEDQIDFIKASVLAGENYEDEMPTEPSQDSKAKSDFEMLQEERKLLPIYPYRDELLAA
VEKHQVLIILGETGSGKTTQLPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVAQEMGVK
LGHEVGYSIRFEDCTSEKTVLKYMTDGMLLRELLGEPDLAGYSVIIVDEAHERTLSTDIL
FGLVKDITRFRPDLKLLISSATMDAEKFSDYFDSAPLFRIPGRRYPVVIHHTRAPEADYL
DAAIVTVLDIHVKQPLGDILVFLTGQEEIETADEILKHRIRGLGTKIRELIICPIYANLP
TELQAKIFEPTPEGARKVVLATNIAETSLTINGIKYVIDPGFCKMKSYNPRTGMESLLIT
PISKASANQRSGRAGRTGPGECYRLYTAYNYYQDLEDNTMPEIQRTNLASVVLALKSLGI
HDLLHFDFMDPPPAEALLKALELLFALGALNKHGELTKVGRRMAEFPLDPMLSKMIVASD
KYKCSDEIISIACMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYSSWKET
NYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTANLNDYDSIKKSIVAGFFPHS
AKLQKNGSYRTVKHPQTVYIHPTSGLSQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVE
IAPHFYQLKDVEDGGSKKMPKGNGRAAAL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggggagcaacgatttaaagacctgggtctcggataagctgatggttctactgggttat
tcacaaaatgccgtagttacatatctcattgcaaaagctaaaagttcgaaatcacccact
gaccttctgaatgagttggcggagtatggcttttcttcatcaagtgaaactcgttcattt
gctgaggaaatgtatgccagagttccccgaaaagtgactggtgcgaatctttataagcaa
caggaagcagaggccgctatgctggtgaggaagcagaaaacatacgctcttttggatgcc
gatgatgaagaagatgaagatgggggcactattgatcaaaaacggtcttctgcttctgaa
actaaaaaatcagataaaggcaggaaaaggttcagaaagaaaagcgggcattcagaagat
gatgatgacgaagtggctgttaaagatgatgataggcaagttaagagaagaatttctcaa
gatgaggatgatgggtcagagtctgaagaagaaaggttacgtgaccagaaagagagagag
gagttggagcagcacttaagagatcgtgatgctgcacgaacgcggaagctaacagagcaa
aagttgtcaaaaaaagagcaagaagaggctgttcgaagagccaatgctttggaggaggat
gatattgggcctttaaggaaagtctcaagacaagaatatttgaagaaaagggaacagaag
aaattagacgaactaagggatgagatagaagatgagcagtatctttttgaaggtgttaag
gtcactgaagcagaaattagggaatataggcacaagaaagaactttatgagctcttgaag
aaaaaaacagaagacacagataatgtagaggagtatagaatgccagatgcttatgatcta
gaagggggtgttaaccaagagaagagattcgctgttgctgtgcaacgatacagggatcta
gatgcttcggacaaaatgaacccgtttgctgagcaagaagcttgggaggaccatcagatt
ggaaaagcgacactaaattttggtgccaagaataagaagcaaacatctgatgattatcag
tacgtttttgaggaccaaatagacttcataaaggcgtctgtcttggctggtgaaaattat
gaagatgagatgcctactgaaccgtctcaagattccaaggcaaagtcagattttgagatg
cttcaggaggagagaaaattactgccaatttatccatatcgtgatgaactgcttgcggct
gtggaaaaacatcaggttcttatcattttgggggaaactggttcaggcaagactacgcaa
ttaccacaatatcttcacgaagctggttacacaaagcgtggaaagattggttgtacgcaa
cctcgaagagttgcagctatgagcgttgctgctcgtgttgctcaagaaatgggtgtcaag
cttgggcatgaggttgggtattccattcggtttgaagattgtacctcagaaaaaacagtt
ctgaagtatatgactgatgggatgctgctgcgtgagcttcttggagaaccagatcttgct
ggttacagtgtcattattgtggatgaggctcacgaaagaactctgtcaaccgatatacta
ttcgggctagtcaaggatataacacggtttcgaccagatctgaaattattgatatccagt
gcgacaatggatgcagaaaaattttctgattattttgattctgccccgttattcagaatt
cctggaaggagatatccggttgtgattcaccatacaagagcaccggaagcggactacctg
gatgcggctatagttacagtgcttgatatccatgtgaaacagccacttggagatattttg
gtcttcctcactggtcaagaggaaattgaaactgctgacgagatcttgaagcacaggata
agaggtctgggtacaaagattcgcgaacttattatatgccctatatatgcaaaccttccc
actgaactgcaagcaaaaatatttgaaccaactccagaaggggcacggaaagtagtgctg
gcaacgaatattgctgaaacatcattaaccattaatggtattaaatatgttattgacccg
ggcttttgcaagatgaagtcgtataacccgaggactgggatggagtctttgcttataact
cctatttctaaggcttcagcaaatcaacgaagtggtcgagcaggaagaacaggtccagga
gagtgttaccgattatacacggcttataattactaccaggacttggaggacaatacaatg
ccggaaatacaaaggacgaaccttgctagcgtggtgcttgctttgaagagtctcggaatt
catgatctgctccactttgacttcatggaccccccacctgctgaagctcttctcaaggct
ttggagttgctctttgctttgggtgctctgaataaacatggtgaattgactaaagttggc
agaaggatggcagagtttccacttgatcctatgttatccaagatgattgttgcttctgac
aaatacaagtgctctgatgaaataatctcgattgcctgcatgttgtctgtgggaaattca
atattctaccgccctaaggataagcaagttcatgccgacaatgcaagattgaatttccat
accgggaatgtcggtgatcacattgctttgcttaaggtttacagttcttggaaggaaaca
aattactcaactcaatggtgctatgagaactacattcaggtcaggagtatgaaaagggcc
agagatatacgggaccaactggaagggcttctcgagagagttgaaatagaactcaccgcc
aatctgaacgactatgattcaataaagaagtctatagtagctgggttcttcccacactcg
gccaaattacagaagaatgggtcatatagaacagtgaaacatccacaaaccgtatacata
catcctacttcaggactatctcaggtattaccaagatgggtggtatatcatgaacttgtc
ctgaccaccaaggaatatatgcgccaggtgacagagttgaagccggagtggttggtggaa
atagctcctcacttctaccaactcaaggatgtcgaagacggtggatccaagaaaatgccc
aaaggcaatggacgagcagccgccttgtag
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