Tarenaya hassleriana (spider flower): 104812944
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Entry
104812944 CDS
T04125
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104812944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thj03021
]
104812944
03019 Messenger RNA biogenesis [BR:
thj03019
]
104812944
Transcription machinery [BR:
thj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104812944
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104812944
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104812944
NCBI-ProteinID:
XP_010538677
LinkDB
All DBs
Position
Unknown
AA seq
814 aa
AA seq
DB search
MESEKVLNTRLLSINSVRSNKAMPVELPQKPPPPSLLDRFRALLSQREEELNAVSGEDGV
TPLRTEEIVHLYEVVLAELTFNSKPIITDLTIIAGEQREHAEGIANAICARILEVPVEQK
LPSLYLLDSIVKNIGREYIRCFSSRLPELFCEAYRLAHPSVHPSMRHLFGTWTSVFPSSV
LRKIELQLQFSSAANHQSSSRTSEPPQPTRGIHVNPKYIRRLEPLAAESTLRGVNSSERV
YGQNSVAGYDDPEDQLEGPSSLIGTRASAVGKFSRVSSAIGGGADSFPRRFSDGASAFNP
ALSYGVGHSTGRDDEQSEWRRKDILRNGNYRQGPRALIDAYGVDTSKHVTNIKPIHSGKI
DINGMQGTVATTSWQNTEEEEFDWEDMSPTLDRSRTGKFLRSSPPAVGSVRARPRLGLSS
SSSELEVPPFDRGSSVLSRIGPSGADSIPDGLKPPISTGTWSHLNVRGSHSLPVPSIHLQ
HSVNPGNGMSNRLPGKPLYRPENQVSQSYSHFNSLTQQNQLQINSLASSSAMAPRPMQPL
VPHVSHGYHPQGPTIRPPLPIHGVPNNSFSVGGGAMPPLPSGPLCQLGSVSQNVSSAISN
QPPGAFSGLIGSLMAQGLISLNNQPATEDSLGLEFDADLIKARHESAVSALYADLPRQCT
TCGLRFKCQEEHSSHMDWHVTRNRMSKSRKQKPSRKWFVSASMWLSGAEALGTEAAPGFL
PAEPTEEKKDDEELAVPADEDQTSCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGSAAG
MEKSQLGPIVHAKCRSESNGGDMEEGNQRKKMRS
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggagaaggtcctgaacactaggcttctctcgatcaacagcgttcgcagcaac
aaagccatgcccgttgagctacctcagaaaccgccgccaccgtcgctgctcgaccggttc
agggccctgcttagtcagcgcgaagaggagctcaacgccgtctccggagaggatggagtt
acgccgctacgcacggaggagattgttcatctctacgaggtcgttttggccgagctcaca
ttcaattccaagcccatcatcactgatctcaccataatcgccggggaacagcgggaacat
gccgaaggcattgccaatgctatctgcgcacgaatcctcgaggttccagttgagcaaaag
ctgccttctctctatcttttggacagtattgttaagaacattgggcgagaatacatccgt
tgcttctcttcccgtttacccgagctcttctgcgaggcatacaggctagcacatccgagt
gtgcatccttcgatgcgccacctgtttgggacatggacatctgtatttccatcttctgta
ttacgcaagattgagttgcaactgcagttttcttctgccgccaaccaccaatcttcttcg
aggacttctgaacctcctcaaccaacaagaggcatacatgtgaatccaaagtatatacgc
aggctggagcctttggctgcagaaagtactttgagaggagtcaattctagtgaaagagta
tatggccaaaattctgtagctggatatgatgatcctgaagatcagttagagggtccatct
tctctgataggaacaagagctagtgcagtaggaaaattttcccgcgtatcctcggcaatt
ggaggtggagctgacagttttcctaggagatttagtgacggggcatctgcttttaatcca
gcccttagttacggagtcggtcattccacaggcagagatgatgaacaaagtgaatggcga
agaaaggacatactgcgcaatggaaattatcgccaaggacccagagctttgattgacgca
tatggagttgacactagcaaacatgttacaaacattaaaccaattcactcgggaaagatt
gatataaatggtatgcagggtacggtggctacgacatcatggcagaacactgaagaagaa
gagtttgattgggaggacatgagccctacactggatcgtagcaggactggtaaatttctg
agatcatcccccccagcagtaggaagtgtaagggcaaggcccagattaggtttatcgtca
tcgagcagtgaattggaggttcctccatttgacaggggctcttctgtgctatcaagaatc
ggaccttctggtgctgattctatccccgatggattgaaaccaccaatatcaacagggaca
tggtcacatttaaatgtgcgtggatcccactctctacctgtaccttctattcacttgcaa
cattcggttaatcctggtaatggaatgtcaaatcgcttgcctggtaagcctttgtatagg
cctgagaaccaggtttcccagtcatatagtcattttaattctttgactcaacagaaccag
ttgcaaataaactctttggcatcttcgtctgcaatggctccaaggccaatgcagcctctg
gttcctcatgtaagtcacggataccatccacaagggccaacaattagaccccctttaccg
atacatggtgtaccaaataattctttcagtgtggggggtggagccatgcctcctcttcct
tcagggcctttatgtcagttaggatccgtctctcagaatgtatcatcagcaatctctaat
caaccaccaggagcattttctggtctgattggctctctcatggctcaaggtttgatatca
ttaaacaatcagcctgctaccgaggattcgctggggcttgaatttgacgcggacttgatc
aaagcacgtcatgaatctgcagtaagtgctttatatgcggatctaccaagacaatgcaca
acatgtggtcttcgtttcaagtgccaagaagagcacagcagccacatggattggcatgtt
acaagaaacaggatgtccaagagccgtaagcagaagccttctcggaaatggtttgtaagc
gctagcatgtggcttagtggcgcagaggcactgggaactgaagcagcgcctgggttctta
ccggctgaaccaacagaagaaaagaaagacgatgaagagttggctgttccagccgacgaa
gatcaaacttcatgcgcgttatgtggtgagccatttgaagacttctacagtgatgaaacc
gaggaatggatgtatagaggtgccgtgtacatgaatgcccccgatggttcagcggcaggc
atggagaagtctcagttaggtcctatagtgcatgcaaaatgcagatcagagtccaatggg
ggtgatatggaagagggtaatcaaagaaaaaaaatgcggagttga
DBGET
integrated database retrieval system
