Tarenaya hassleriana (spider flower): 104814901
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Entry
104814901 CDS
T04125
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104814901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104814901
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104814901
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104814901
mRNA degradation factors
3'-5' decay
Ski complex
104814901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
CobA_CobO_BtuR
AAA_22
Motif
Other DBs
NCBI-GeneID:
104814901
NCBI-ProteinID:
XP_010541437
LinkDB
All DBs
Position
Unknown
AA seq
1350 aa
AA seq
DB search
MMDRVEAANELAFRVGFSGHGGHLRVEPLYSVERGDAVNTLPDFVSPPAFVKETKESIKN
HIEEKYLHPRLDTDQFSAEKAGRQWDFDWFARVKMPLEPSLPRSVVVPVWELPFRRQEKD
SEKGVWEVKSVEVDVTEQMYGDQDSGILPRMVGPPKDFLRGSLNIRPFRPGGLEDSQSSE
RVVPDGVSDGSWVQEVLKGGPAQTVPPSFKRGLDLGDLTPYPQTWNVYKDQNLLDSVSDS
NSGELSIQFDDLFNKAWEEDTFSELERDAGSESPKAASEADAQTETNKINVASKETETEL
SVLDEILSSAKTGMLSQEEVTHSRDKQKQKEGWAITGDNEGIADRFYELVPDMAMEFPFE
LDRFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKY
RDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDV
ERGVVWEEVIIMLPRHINFVLLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCL
FYSGELYKVCENEMFIPRGVKDAKDTHKKKNSSSVTAGPKPLTGSSGHQDGNRSQKHENH
SRGKQNKHSSSKHLGNSSGTWQYDGSQKNGNLRRSATSNWLLLINKLSKKSLLPVVVFCF
SKNYCDKCADTLIGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRVQSLLRRGIGV
HHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLP
GEYTQMAGRAGRRGLDKIGTVIIMCRDEIPDESDLRRTIVGSATRLESQFRLTYIMILHL
LRVEELKVEDMLKRSFAEFHSQKKLPEKQQLLMLKRAQPIKTVECIKGEPAIEEYYEMYS
EAEEYNSKISEAVMQSPHAQQFLNPGRVVVVKSEKGIDNLLGVVLKGPSSTNRQYIVLVI
KPEILSREQSLVSGDKKSSELSQGYFMAPKSKRGLEDEYYSMVTSRKGSGAIKIDLPYHG
NAVGVGYEVRGFDNKEFLCICHSKIKIDQVRLLEDGSKTAFSQTVQQLLDLKSDGNKYPP
ALDPIKDLKLKDAEVVEMYYKWASLLQKMSMNKCHGCVKLEEHMKLAREIKKHKEDLKVL
EFEMSDEALKQMPDFQGRIDVLKTIGCIDDELVVQIKGRVACEMNSGEELICTEFLFENQ
LDDLEPEEAVAIMSAFVFQQKNTSAPSLTPKLAMAKQRLYETAIRLGELQNHYNLQIDPE
EYARENLKFGLVEVVYEWAKGTAFAEICELSDVPEGLIVRTIVRLDETCREFKNAAVIMG
NSALYKKMETASNSIKRDIVFAASLYITGL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgatggatagagtcgaagcggccaacgagctcgctttccgggtcgggttctccggccat
ggcggtcacctccgtgtcgagcctctttactcggtggagcgcggcgacgccgttaatacg
cttcccgattttgtctcccctcctgcgtttgttaaggaaacaaaagaatcaataaagaac
catattgaggagaagtatctacatccgagattggacactgatcaattttctgctgaaaag
gccgggagacagtgggactttgattggtttgcaagggttaaaatgcctctggaaccctct
ttacccaggtccgttgtggttccagtttgggagttgccattcagacgtcaagaaaaggac
tctgagaaaggagtctgggaagtaaagtcagtggaggttgatgtaacggaacaaatgtat
ggagatcaagattctggaattttaccgcggatggttgggccaccaaaggattttctgaga
ggaagcctcaatattcgtccttttcgtccaggtggcttggaggattctcaatcttcggag
agagtggttccagatggtgtgtctgatggctcatgggttcaggaagtgcttaaaggggga
cctgctcagaccgttccccctagctttaagcggggtttagatctaggagatctgacgcct
tatccccagacttggaatgtttacaaggatcagaatttgcttgacagtgtgtcggacagt
aattcgggcgagttgtccattcagtttgatgatctatttaataaggcttgggaggaagat
accttttccgaactcgagagagatgcagggtctgagtctccaaaggcagcatctgaggct
gatgctcaaaccgaaacaaacaaaatcaatgtggccagtaaggagactgagactgaatta
tctgtgctggatgagattttatcatctgccaaaacaggaatgttgtcacaagaggaagtc
acccacagccgtgacaagcagaaacagaaagaaggctgggccattactggagacaatgaa
ggcattgcagaccggttctatgagcttgttcctgacatggcaatggaatttccttttgaa
ttggacaggtttcagaaggaggctatatactatctagaaaagggggagtctgttttcgta
gcagctcatacatcggctggaaagacagttgttgcagaatatgcatttgctttggcaacc
aagcactgtaccagagctgtttatactgctcccattaaaaccatcagcaaccaaaaatat
agggatttttgtgggaagtttgatgtagggcttctcacaggtgatgtcagcataaggcca
gaggcatcctgtctcatcatgacgactgaaatattaaggtcaatgctttatcgtggtgct
gatattatacgtgatatagaatgggttatatttgatgaagtacactatgtcaacgacgta
gagagaggggttgtctgggaagaagtcatcatcatgcttccaaggcacataaattttgtc
ctcctttctgcaacggtgcccaacacagttgaatttgctgattggatcgggcgaacaaaa
cagaaagagatacgtgttactggaacgacaaaaagaccagttccacttgagcattgccta
ttttattccggagaactgtacaaagtgtgcgaaaacgaaatgtttattcctagaggagta
aaagatgctaaagacacacacaagaaaaagaattcaagttcagttactgcgggtccaaaa
ccactaacaggctcatcaggacatcaagatggaaaccggtctcagaaacatgaaaatcat
tctcgtggcaagcagaataaacattcaagttcaaaacatttgggaaacagttccgggaca
tggcaatatgatggcagtcagaagaatgggaatcttagaagatcagcaacttcaaattgg
ttgttgcttatcaacaagctctcaaaaaagtcactattacctgtggttgtcttctgcttc
tcaaagaattattgcgacaaatgtgctgacactttgattggtactgatctcactagtagt
tctgagaaaagtgaaatccgggtcttttgtgataaagctttttcaagattgaagggatct
gatcggaatttacctcaggttctcagagtccagagtcttctccgtagaggaatcggtgtt
catcatgctgggctacttccaatagtaaaggaagttgttgaaatgcttttctgccgtggt
gtgattaaggtgctattttcaacagagacatttgcaatgggagttaatgctccggctaga
acggtcgtttttgatgctctgaggaagtttgacggcaaggaattcagacagttgcttcct
ggagagtacactcagatggcagggcgcgctggcagaagaggacttgataaaattgggaca
gtgatcatcatgtgccgcgatgagattcctgatgagagtgatctgaggcgtacaattgta
ggaagcgcaacaagacttgaatctcaattccgactaacctacataatgatcctccatctc
ctgcgcgttgaagagttgaaggtggaggacatgttgaaaagaagctttgctgaattccac
tctcagaagaaacttcccgaaaagcaacagcttctcatgctaaaacgtgcccagccaatc
aaaacggtcgaatgcatcaaaggtgaaccagcaattgaagagtactatgagatgtattct
gaagcagaagaatataacagcaaaatatcggaagcagtaatgcagtcgcctcatgctcaa
cagtttcttaatcctggacgtgtcgtagtcgtgaaatcagaaaagggcatagacaattta
ctgggagtcgttttgaaaggaccttcaagcactaacaggcaatacattgttttagtgatc
aaacctgaaatactgtcacgagagcaatccttggtcagcggtgacaagaaaagttccgaa
ctctctcaaggttactttatggcacctaaatcgaaacgtggtcttgaagatgagtactac
tctatggtgacgtctcggaaaggttcaggtgcaatcaagattgatctcccataccatgga
aacgctgttggggtagggtacgaggttagaggatttgataataaagagttcttatgcata
tgccatagcaagataaagattgatcaggtccgtctacttgaggatggaagcaagacagct
ttttctcagacggtccaacagcttcttgatctgaaatcagatggaaacaagtatcctcct
gccttggacccaattaaagatttgaagctgaaagatgctgaggttgttgagatgtactac
aaatgggccagcctgttgcaaaagatgtcaatgaataagtgtcatggttgtgtcaaactg
gaagagcacatgaagttggccagggagattaagaagcacaaggaggatcttaaagtgctt
gaatttgaaatgtccgatgaagcccttaaacagatgcctgattttcagggccggattgat
gttctgaagacaattgggtgtatagatgatgaacttgttgtccaaatcaaaggacgtgta
gcatgcgagatgaattctggggaagaactgatttgcaccgagtttttgttcgagaatcaa
ctcgatgacttggagccggaagaagcagtggctataatgtctgcctttgtatttcagcag
aagaacacatccgcaccttcccttacaccgaagctggccatggcaaagcagagattatac
gagacggcaataagactgggtgaacttcagaaccattacaacttacaaatagatccagaa
gaatatgcacgggagaatctcaaattcggtctggtggaagttgtctatgagtgggcaaag
gggactgcgtttgcagagatatgcgagctgagtgatgtgccagaaggactgatagtacgg
acaatagtgaggttggatgagacatgtagagagttcaagaacgcggctgtgataatgggg
aactccgctctctacaagaaaatggaaacagcctctaactccatcaaacgcgacatcgtc
ttcgctgccagcctctacatcaccggtctctag
DBGET
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