Tarenaya hassleriana (spider flower): 104817022
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Entry
104817022 CDS
T04125
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104817022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104817022
03036 Chromosome and associated proteins [BR:
thj03036
]
104817022
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104817022
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104817022
mRNA degradation factors
5'-3' decay
Decapping complex
104817022
Chromosome and associated proteins [BR:
thj03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104817022
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
104817022
NCBI-ProteinID:
XP_010544383
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
MNTRGRYPPGIGAGRGAVNPNNPGFLSRPVYQQQQPQPPPPHYVQRGNYSQNHQQFHQAP
QQQQQQQQQQWLRRAQFAGSNNNSGSSGNNNGVAVDEVEKTVQSEAIDLNSQDWKARLKL
PPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILA
RAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVT
TGGTSLKDDIMRLYQPVHFLVGTPGRILDLAKKGVCVLKNCSMLVMDEADKLLSQEFQPS
VEQLIRFLPENRQILMYSATFPVNVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEER
QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHD
FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLIT
YEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaatactagaggaaggtatcccccggggattggtgctggtcgtggagctgtcaacccg
aacaaccctggcttcctttcgaggccggtttatcagcagcaacagccgcagccgccgccg
ccgcattacgttcagcgtggcaattactcacagaaccatcaacagtttcaccaggcgccg
caacagcagcaacagcaacagcaacagcagtggcttagaagagcccagttcgccggaagc
aacaacaacagcggcagctccggcaacaacaacggtgtcgcagttgatgaggtcgagaag
acggttcaatccgaagctattgacttaaattcacaagactggaaggcgaggctaaaacta
cccccacctgacactcgctacagaacagaggatgtgacagccacaaaaggaaatgagttt
gaagattattttttgaagcgagaacttctcatgggtatttatgagaagggttttgaaaga
ccttctcccattcaggaagagagtattccaattgccttaaccggtagtgatattcttgcc
agagccaaaaatgggactggaaagacagctgcattttgtattccagccttggaaaaaatt
gaccaagataacaatgtcattcaagttgtgatacttgttccaacacgagagttggctctt
cagacatcgcaagtctgtaaggagctgggtaagcatttgaagatacaagtcatggtgacc
actggtggcaccagtctgaaagatgatattatgcgtctgtatcaacctgtccattttttg
gtgggaactcctgggaggattctagatcttgccaaaaagggtgtttgtgtattaaaaaat
tgttcaatgcttgttatggatgaggctgacaagttattgtctcaagagttccaaccttcg
gtggaacagttgattaggtttcttccagaaaatcgtcagatattgatgtattcagccaca
tttccagtcaatgttaaggactttaaggacagatatctaaggaagccttacatcattaat
ctcatggatgaactcacactgaagggtattacacaattctatgcttttgttgaagaacgc
cagaaagttcactgcttgaatacccttttttccaagctgcaaataaatcaatcgatcatt
ttctgcaactcagtgaaccgtgtggagctcttagctaagaaaatcacagaacttggttat
tcttgcttttacattcatgcgaagatgctccaagaccaccgtaacagagtctttcatgac
ttccgcaatggtgcatgccgaaatcttgtgtgtactgatctatttacacgtgggattgac
attcaagcagtcaatgttgtaattaactttgatttcccgaagaactcggaaacttatctc
cacagggttggtcgatcaggaagatttggacatcttggtttggctgtgaatctgatcacc
tatgaggaccgctttaacttatataggattgagcaagaacttggaactgaaatcaagcaa
attcctccgcatattgatcaggcaatttattgccaataa
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