Tarenaya hassleriana (spider flower): 104818942
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Entry
104818942 CDS
T04125
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104818942
09123 Folding, sorting and degradation
03018 RNA degradation
104818942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104818942
03041 Spliceosome [BR:
thj03041
]
104818942
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104818942
mRNA degradation factors
5'-3' decay
Lsm complex
104818942
Spliceosome [BR:
thj03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104818942
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
104818942
NCBI-ProteinID:
XP_010547049
LinkDB
All DBs
Position
Unknown
AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQILLNGNNIAILVPGGSPEAE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaatccatcgcagcttcttccatcagagttgatcgacaggtgcataggatcg
aagatatgggtaataatgaaaggagacaaggagcttgtgggtactctccgagggttcgat
gtttacgtcaacatggtccttgaggatgtcaccgagtatgagattacatcggaagggaga
aggatcacaaagctcgatcagatattgcttaacggcaacaacattgccattctggttcct
ggtggctctccagaggcagaatga
DBGET
integrated database retrieval system