Tarenaya hassleriana (spider flower): 104819712
Help
Entry
104819712 CDS
T04125
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104819712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104819712
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104819712
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Motif
Other DBs
NCBI-GeneID:
104819712
NCBI-ProteinID:
XP_010548201
LinkDB
All DBs
Position
Unknown
AA seq
933 aa
AA seq
DB search
MLQSKVFNKKTRGGRIQKQVREVYLRDDIYCGAFACKSCDTSAARLSSSKIIVVDTNVVL
HQIDLLENPAIDDVVVLSVVLDEVKNKNTSVYNRIRALCSNPARRFYVFSNHVHKDTYVQ
AMEKESANDRNDRAIRVATQWYQKHLGSTSKVLLITNDRENKRKAAEEGISAETIEAYVK
SLGQPGLLDLLVQPSSEDVTMEDVDDSRPSKRKVVYPEHKPMSEITAGLHRGIYHQGKLR
VNRFNPFEAYVGSESIGEEIIIYGRSNMNRAFDSDIVAVELLPRDQWQEEKALSIVDEDE
EEDDNVHLVPNSADDAPRTSNLAQGTSGDKSTVPARPSGRVIGIIRRNWHSYCGSLEPMS
LPAGSGGVAHALFVSKDRRVPKIRIVTRQLQNLLDKRIIVAVDSWDRQSRYPSGHYVRTI
GEIGDRETETEVVLIENDVDYRPFSAQVLACLPPLPWSVSSEDLANPIRQDLRHVRVFSV
DPPGCKDIDDALHCTSLPNGNFEVGVHIADVTNFVLPDTPLDDEASKRGTSVYLVERRID
MLPKPLTEDVCSLRADVERLAFSVIWEMGPEAEIISTRYTKSVIRSAAALSYVEAQARMD
DSRLTDPLTTDLRNMNSLAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIRE
ANQMVEEFMLAANVSVAEQILKHFASCSLLRRHPIPTREMLEPLLRTAAAVGITLDVSSS
KTLADSLDRAVGEDPYFNKLIRILATRCMTQAVYFCSGDLTPPEYHHYGLAAPLYTHFTS
PIRRYADVIVHRLLAASLGIYKLPTVFQDQPHLTSVADNLNYRHRNAQMASRGSVELHTL
IYFRKRPTDAEARIVKIRSNGFIVFVPKYGIEGPVYIIAKGEKGGGDWYVDEQHQKVVKM
DGSLSYSVLQTVRIHMEVVEPQPNRPKLQLNLL
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagagcaaggtcttcaacaaaaaaaccagaggagggagaatccagaagcaagtg
agagaggtgtatctacgagatgacatatactgcggagcttttgcttgcaagtcctgcgat
acttcagctgctcgcttgtcttcctctaagattattgtcgtggataccaacgtcgttctt
caccaaattgacttgctggagaatccggccatagacgacgttgttgttctgtccgtggtg
ttggacgaggttaagaacaagaacacgtctgtttataacagaatcagagctctctgcagc
aacccagcacggcgattctatgttttctcgaatcatgtccacaaggatacttacgtgcag
gccatggagaaagaaagcgccaatgaccgcaatgatagagctatccgggttgctacacaa
tggtaccagaaacatctaggcagtacatccaaggtgttgcttataactaatgacagagaa
aataaaaggaaggcagctgaagaaggaatttctgcagagacaattgaggcgtatgttaaa
tcactggggcaacccggtttgctggatctgcttgtccaaccatccagtgaagacgttacc
atggaagatgttgatgattccagaccttcgaagaggaaagtcgtatacccagagcataag
cccatgtctgagattactgctggcctacaccgtggaatataccatcaagggaaacttcgc
gtcaatcgtttcaatccttttgaagcttatgttggaagcgagagcattggcgaagagata
attatttatggtcgtagcaacatgaacagggctttcgacagtgatattgttgctgttgaa
ctcttgcctcgagatcaatggcaagaggagaaggcattatccatagttgatgaagatgag
gaagaggatgataatgttcatctggttcccaacagtgctgatgatgctcccagaacctct
aatttggcacaagggacttctggggataaaagtactgtccctgctcgcccatcaggtcgt
gtaattggtattatccgtagaaattggcactcctattgtggatctcttgagccaatgtca
ctgcctgctggtagcggtggtgttgcacatgctttatttgtctccaaagatcgtagagtt
ccaaagatcagaattgtcacacgccagctacagaatcttttagacaagaggattatagtg
gcagttgattcttgggatcggcaatctcggtatccttctggccattatgtacggacaatt
ggggaaataggtgacagggaaactgaaactgaggttgtcttgatagagaatgacgttgac
tacaggccattctcagctcaagttttggcttgcttgccacctttgccctggtctgtatct
tctgaagatctggccaatcctatcaggcaagatttgcggcatgtccgtgtctttagtgtg
gaccctcctggttgcaaagatattgatgatgcactgcattgcacatctcttcctaacggg
aactttgaagttggagtccatattgctgatgtaacaaattttgttctccctgatactcct
ttggacgacgaggcatcaaaaagaggcacatctgtttatcttgttgagcgccgcattgat
atgcttcccaagcctttgacagaagatgtctgttcacttagagctgatgtggagaggctc
gcattctctgttatttgggaaatgggccctgaagctgagattatctcaacgagatataca
aagagtgtcatcaggtccgctgcagcattgtcctatgttgaagctcaggctcggatggat
gatagccggttgaccgaccccctgactacagatctgagaaacatgaactctttggcaaag
attatgaggcaaaggcgtattgacaggggagccttgactcttgcttctgctgaagtcaaa
tttcagatcgatacagagactcatgaccctcttgacatcggcatgtatcagattcgagaa
gcaaaccaaatggttgaagaatttatgcttgcggctaatgtttcagttgcagaacaaatc
ctcaaacatttcgcttcttgttcactgttgaggcgtcatcctattccgacaagagagatg
cttgaaccattgctgcgtactgctgcagctgtgggaattaccttagatgtttcgtcatcc
aaaactctggccgattcacttgaccgtgcggtgggtgaggacccgtatttcaataagctg
atcaggatattggcaactaggtgcatgactcaggctgtatacttctgtagtggggacctc
actccaccagaatatcatcattatgggcttgcagcacctctctatactcactttacatct
cccattcgaagatatgcagatgtcattgtacacagattacttgctgcttcattggggata
tacaagcttccaacagtgttccaagaccaacctcatcttactagcgttgctgataatttg
aactatcggcataggaatgcccagatggcaagtcgaggttcagtagagctgcatactctc
atttacttccgaaagcgacccacagatgcagaggcgagaattgtgaagatacgatccaat
ggtttcatagtgtttgttcctaagtacggtatagaagggcccgtttatataatagcgaag
ggtgagaagggaggaggagactggtacgtagacgagcagcaccagaaggttgttaagatg
gatggcagtttgtcttacagcgtcttgcagactgtgaggattcacatggaggtagtggag
ccgcagcctaaccggccaaaactccaactaaatctattgtaa
DBGET
integrated database retrieval system
