Tarenaya hassleriana (spider flower): 104820406
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Entry
104820406 CDS
T04125
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104820406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thj03400
]
104820406
DNA repair and recombination proteins [BR:
thj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104820406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF2465
Mating_N
Motif
Other DBs
NCBI-GeneID:
104820406
NCBI-ProteinID:
XP_010549145
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MKDNFEEQNKLPELKLDVKQAQGFLSFFKTLPADPRAVRFCDRKDYYTAHGENATFIAKT
YYHTTTALRQLGSGSDALLSXKKSRNMFETIARDLLLERNDHTIELYEGSGSNWRLVKTG
SPGNIGSFEDVLFANNEMQDTPVVVSILLNVHESGYAIGMAYVDLTRRILGVAEFLDDSH
FTNLESSLIALGAKECIFPAEPGKSNERKSLHDSLKRCAVMITERKRTEFKARDLDSDLR
RLVKGNIEPVKDLISGFDLATPALGALLSFSDLLSDEANYGSFTVRRYDLGSFMRLDSAA
MRALNVMESKTDANKNFSLIGLMNRTCTAGMGKRLLHMWLKQPLVDLDEIRTRLDLVQCF
VEDAGLRQDLRQHLKRISDIERLVHSLERRRGGLQHVIKLYQSTIRLPFIKTALSQHSGE
FVSLIHERYFTKLEALADEEHLGKFTALVECSVDLDQLENGEYMICSSYDDTLSYLKEQK
ESLEQQIHELHIKTALELNLQADKALKLDKATQFGHVFRITKKEEPKVRKKLATQFVVIE
TRKDGVKFTNTKLKKLGDQYQKVVEEYRSCQKELVERVVQTVTSFSEVFEELAGLLSEMD
VLLSFADLASSSPTPYTRPDITPSDDGDIILEGSRHPCVEAQDWVNFIPNDCRLTRGKSW
FQIITGPNMGGKSTFIRQVGVIVLMAQVGCFVPCEKASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAQHANSDTVGVANYHVSAHIDTCSRKLTMLYKVEEGACDQSFGIHVAEFANFP
ESVVALARQKASELEDFSPSSFLSNEDDPKRKKREHDPEDDVSRGAARAHKFLKEFTEMP
LEEMELGEALGRVREMKDNLQKDASDSVWLQRLL
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaatttcgaggagcagaacaagcttcccgagcttaagctggatgttaaacag
gctcaagggtttctttcgttcttcaaaaccctacccgctgacccgagggctgtccgattc
tgtgatcgcaaggactattatacagctcatggtgaaaatgcgactttcattgcaaagacc
tactatcatacaacgactgctctacgccagctcggtagtggatcagatgctcttttgagc
tgaaagaagagcaggaacatgtttgagactattgctcgagatcttctcctggagcgtaat
gatcacactatagagctttacgagggaagcgggtcaaattggcgacttgtgaaaactggt
tctcctggaaacattgggagtttcgaagatgtgttgtttgctaacaatgaaatgcaggac
acgccagtcgtggtttccattctccttaatgtccatgaaagtggctacgctattgggatg
gcctatgttgatcttaccaggcgaatcctcggagtggctgagtttctcgatgatagtcat
ttcacgaatctggaatcttctctgattgctcttggcgctaaagaatgcatttttcccgct
gaacctggaaaatcaaatgaacgcaaaagcttacacgattctcttaagaggtgtgctgtg
atgataacagagaggaagagaactgagttcaaagctcgagacttggattcagatctgagg
agactggtgaaggggaacatcgaacccgttaaggatctgatttctggatttgatcttgcc
acacctgctctaggtgctttactctcattttccgatcttctctctgatgaggcaaattat
ggaagtttcactgtgcggaggtatgatcttggcagcttcatgagactggattctgcggcc
atgagggctctgaatgtgatggagagcaaaaccgatgcaaacaagaacttcagtttaatt
ggtctgatgaacagaacgtgcactgcagggatggggaagagactgcttcacatgtggctg
aagcagcctcttgtggatttggatgagattaggactagattggatctggttcagtgtttc
gtcgaagatgctggtctaagacaagatttaaggcagcatctgaagcgaatttcagatatt
gagagacttgtgcatagtcttgagagaagaagaggtggactacagcatgtaatcaagctc
tatcagtcaactatcagacttccattcatcaaaacagctttgtcacagcactcaggggaa
ttcgtatctctcatccacgagagatacttcacaaagctcgaagctttagctgatgaagaa
caccttggcaagttcactgctctggttgagtgctcggtagaccttgaccagctcgaaaat
ggcgaatacatgatttgttctagctatgacgacacgttatcatatctgaaagaacagaag
gaatccttagagcaacaaatccacgagctgcatataaagacagctcttgaactcaatctt
caggctgacaaggctctaaagctcgacaaggccacacaatttggccatgtgttcaggatc
acaaagaaggaggaacctaaggtcaggaagaagttggcgacacagtttgttgtgatcgag
acacgcaaagacggagtgaagttcacaaatacgaagcttaagaaactgggagatcaatat
cagaaggttgtagaggagtacaggagttgtcagaaggagctagttgagcgtgttgttcag
accgtgaccagcttctctgaggtgtttgaggaattagctggattgctttctgaaatggat
gtcttgctaagctttgccgatttggcttccagtagcccgactccatatactagacctgat
atcaccccttcggatgatggagacattatattagaagggagccgacacccatgtgtagaa
gctcaagattgggtgaattttataccaaatgattgtagacttaccagagggaagagttgg
ttccagataataacagggcctaacatgggagggaagtccacttttattcgccaggtcggt
gtgattgttctgatggctcaagttggttgctttgttccttgcgagaaagcttcaatctcc
attagagactgcatattcgctcgtgtaggagccggcgattgccaactgcggggagtgtct
acctttatgcaggaaatgctcgaaactgcatctatactgaaaggagcgaccgataagtcg
ttgataatcatcgatgagctgggtcgtggaacatcaacttatgatggattcggattggca
tgggctatatgcgagcatctggttgaagtgataaaggcacctactttgtttgcaacccac
tttcatgagctaactgccttggcccaacatgcaaattctgacacagttggtgtggcgaat
taccatgtgagcgctcatatcgacacgtgtagccgcaaactcaccatgctttacaaggta
gaggaaggggcttgtgaccaaagttttgggattcacgtggcggaattcgcaaacttccca
gagagcgtagtggcactcgcccgacagaaagcttctgaattggaagatttctccccttct
tccttcctttccaacgaggatgatccgaaaagaaagaagagagagcatgatccagaggac
gatgtctcgagaggagcggcgagagctcacaagttcctgaaggaattcacggagatgcca
ttggaggaaatggagctcggagaggcactcggacgggtccgtgagatgaaggacaatctc
cagaaggatgcctcggacagcgtctggctccaacgactactatga
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