Tarenaya hassleriana (spider flower): 104820736
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Entry
104820736 CDS
T04125
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104820736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104820736
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104820736
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104820736
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
104820736
NCBI-ProteinID:
XP_010549611
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNLNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHRA
HIIKLELILRRLDNDELSPDQVNDVKDFLDDYVERNQDDFDEFSDVDELYNTLPLDKVEG
LEDLVIAGPLVKGTPLSMKNTLAASASQVHSTNSSVPHPSTSQDKMEDTTSQDSSSEVVV
KTPPPKSGTSLLSTALASAGGRTTSNVPVPSISNSTQTAAESMGNSSSVTAKEEDAATLP
ARRPPSSSMADAPLRGIGRGGPSTQAQTSLPSPSSVNGARSVAASASEVTKRNIMGVDGP
IQPLTSPLSKIALPQTAKANDGTVSDSNPGDAAASIGRAFSPSIVSDVPWRPGGSFQSQN
EMILGRAEIAPDQREKFLQRFQQVQQGNGNFLGLPSLSGGTEKLFSSQQQNPLLQQSSSM
SPHGGLGISVQAPGFNVVGHATLQQQSNAMSQQSSQPLSVTDIDRSRNDEQQQQNLPDDV
NGNEDYAKVPFDHHLQAGMMSSSAADSTQVVARDDPDFSPGLPVQPSQPSSSLGVIGRRS
VADLGAIGDNTGGSAVHNDQMHHLQLLEAAYYRLPQPKDSDPPRHYSPRNPALTPASYPQ
VQAPIINNPLLWERFGSDAYGIDTLFFTFYYQQNTYQQYLAAKELKKQAWRFHRKYNTWF
QRHEEPKIATDEYEQGTYVYFDFHSSKDESQQGWCQRIKHEFAFEYCYLEDELSV
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccgcaagttacagggtgagatcgatcgggtgttgaagaaggttcaggag
ggtgttgatgtctttgacagcatctggaacaaggtttatgacacagacaatttgaaccaa
aaggagaagtttgaggcggacttgaagaaggaaatcaagaagctgcagcggtatagagac
cagatcaagacatggatccagtccagtgaaatcaaagataagaaagtcagtgcatcatat
gagcagtcgctggttgatgctcgcaagctcattgagcgtgaaatggaaaggtttaagatc
tgtgagaaagagaccaagacaaaagccttctccaaggaaggactgggccagcaacctaaa
acggacccaaaagagaaagcaaaggcagaaacaagagattggttgaacaatgtggtgagt
gaactcgagtcccagattgatagttttgaagctgagttggaagggctgtccgtcaaaaaa
ggaaagacaaggccacccagattgacacatttagagacatccattacaaggcatagggct
catataataaagttggaattgatcttgaggcgtctggacaatgatgaattaagtccagat
caggtgaatgatgtgaaagattttctggatgactatgtggaacgaaatcaggacgatttc
gatgaatttagtgatgtcgatgagctctataacacattgccattagacaaggtggagggg
cttgaagatttagttattgctggtcctcttgtcaagggtacccctttgagcatgaagaac
actttggcagcgtcagcatctcaagttcacagtacgaactcgtcagttcctcatccgagt
acttctcaagataaaatggaagacacaacttcacaggacagtagttctgaagttgtcgta
aaaacccctcctcccaaaagtggcacaagccttctatctacggcattagcatcagctggc
ggacggacaacatcgaatgttcctgtcccatcgatttctaattctactcaaactgccgca
gaaagcatgggaaattcatcatcagtgactgccaaggaagaagatgcagcaaccttacct
gctcgcagaccaccctcctcatctatggctgatgctccattaaggggcatcggtagaggt
ggtccctccacacaggcccaaacgagcctgccatctcccagttcagtaaatggagctcgt
agtgttgctgcttcagccagtgaagtaacaaagagaaatatcatgggagttgacggtcca
atccagccacttacttcacctctaagcaaaattgcattgccacaaactgccaaggctaat
gacggaactgtctctgatagcaatcccggtgatgctgctgctagcatcggtagagctttt
tcaccctctattgtctccgatgtgccgtggaggcctggaggttcattccagagccagaat
gaaatgatccttgggagagccgagatagctccagatcaaagagagaaatttttacagaga
tttcagcaagtgcagcagggcaatggtaactttttaggtttaccttcgctttccggaggt
accgagaagctgttttcttctcaacaacaaaatcctctcttgcagcagagctcgtcaatg
tcgccccatggtggcctgggaattagtgttcaggcacctggttttaacgtcgttggtcat
gccaccttacagcagcagtcaaatgccatgtctcaacaatccagccagcccctttctgtc
acagacatagaccgatcgagaaatgatgaacagcagcagcaaaacttaccagatgatgtg
aatggtaatgaggattatgctaaagtaccgtttgatcaccatctacaggcaggaatgatg
agctcctcggctgcagattcaacacaggtggtggctagagatgatccagatttctccccg
ggcttacctgtacaacccagccaaccttccagcagtcttggggtcattggacgtagaagt
gttgctgatctcggggccattggtgacaacaccggcggctcagcagtgcataatgatcag
atgcatcatcttcagttgcttgaggcagcctactatagacttcctcagcctaaagattca
gatcctccaaggcattattctccgaggaacccggctctaacacctgcaagctaccctcaa
gtacaagcgcctatcataaataaccctttgctctgggaacgttttggaagtgacgcttat
ggcatcgatactttgttctttacattctattatcagcagaacacgtatcaacaatatttg
gctgcgaaagagcttaagaaacaggcttggagattccacaggaaatataacacatggttc
cagagacatgaagagccaaagattgccaccgacgagtacgaacagggcacttacgtttac
tttgatttccatagctccaaagacgaaagccaacaaggatggtgccaaagaatcaaacac
gagtttgcgttcgagtactgttatcttgaagacgaactctctgtgtaa
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