Tarenaya hassleriana (spider flower): 104820825
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Entry
104820825 CDS
T04125
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104820825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104820825
Enzymes [BR:
thj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104820825
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104820825
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104820825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
104820825
NCBI-ProteinID:
XP_010549782
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTATTDDVPESAPLEGHFLRYRWFRVQSDR
KVAMCSVHPTEQATLQCLGCIKSKVPVAKSYHCSTKCFSDAWQHHRLLHERAASAAGENG
NDEEELFRYNSSGSGILSTGSLSGPASNANLTNGSTSVYPATISQRTGGGEALVEVGRSK
TYAPMADDVGHVLKFECVVVNAETKQTVGHTCTILTSRVIPAPSPSPRRLIPVSGVDAMG
HLDSDGHLSSTGSFTVLSYNILADTYASSDIYSYCPPWALSWQYRRQNLLREIVGYRADI
VCLQEVQSDHFEEFFGPELDKHGYQALFKRKTNEVFSGNTNTIDGCATFFRRDRFSHVKK
YEVEFNKAAQSLTEAVIPIAQKKTALNRLVKDNVALIVVLEAKFGNRAADNPGKRQLLCV
ANTHVNVPQELKDVKCWQVHTLLKGLEKIAASADIPMLVCGDFNTVPGSAPHSLLAMGKI
EPLHPDLMVDPLGILRPHTKLTHQLPLVSAYSSFARMGGSLVAEQQRRRMDPTTNEPLFT
NCTRDFTGTLDYILYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMP
RTKR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgatacgagtgcatctaccgtcggagattcccatcgtcggctgtgaatta
acgccctacgtgcttctccggcggccggataagaccgccaccaccgacgatgtcccggaa
tcagcgccacttgaaggtcacttcttgaggtatagatggtttcgtgtgcagagcgacagg
aaagttgccatgtgcagtgtgcatccaaccgagcaagccacactgcagtgtctaggttgt
ataaagtcgaaggttcctgttgctaaaagctaccactgttccactaagtgcttttcagac
gcatggcagcatcaccgtctcttgcacgagcgtgcagccagtgctgctggagaaaatgga
aatgacgaggaagagttgttccgttataatagctcgggttctggaattctcagcaccggt
agtttatctgggcctgcctcaaatgctaatctgacaaatgggtcgacatcagtttaccct
gctacaatcagccaaaggactggtggaggggaagcacttgttgaggttggacgctctaaa
acatacgcgccaatggcggatgatgtcggccatgttttgaagttcgagtgtgttgtggtc
aatgcagagaccaaacagacagtgggacacacatgtaccatattgacttcgcgtgttatt
ccagctccttcaccaagtcctcggaggctgattcctgttagtggagttgatgcaatgggg
cacctggattcggatggccacctttcgtctacgggatcattcactgttctttcgtataat
atattggcggacacttatgctagtagcgacatatacagttactgccctccatgggctctt
tcttggcagtaccgtagacagaacttgttacgggaaattgtagggtaccgtgcagatata
gtttgtctacaggaggtgcagagtgatcattttgaggagtttttcggtcctgagctggac
aaacatgggtaccaggctctatttaagaggaaaacaaatgaggttttcagtggtaatacg
aacacaattgacggatgtgctacatttttcagaagagacagattttcacatgtgaaaaaa
tatgaggttgagtttaataaggctgctcagtctttgactgaggctgtcattcctattgcc
cagaagaaaactgctttaaatcgattggttaaggacaatgttgcactgatcgttgttctg
gaagcaaaatttggcaacagggctgctgataatccaggaaagcgccagcttctttgtgtg
gctaacacacatgtaaatgtccctcaagaactgaaggatgtgaaatgttggcaggttcac
acattgttgaaaggactggagaaaatagctgccagcgcagatattcctatgcttgtttgt
ggagacttcaatactgttcccgggagtgcaccacattctcttcttgctatgggaaagatt
gagccattgcacccagatttgatggttgatcctcttggaattctgcgtcctcacaccaag
ctgactcatcagctgccattggtgagtgcttactcgtcgtttgcaaggatgggaggcagt
cttgttgcagagcaacaaaggagaagaatggatcctacaacaaacgaaccattgtttacc
aactgtaccagggactttaccggcacacttgattacatactttacacagcggacacgcta
acggtggaatcactgttggaactgctggatgaggagagcttgaggaaggacacagctctt
ccttctccagaatggtcttctgatcatatagccctcttggctgaattccgctgcatgcct
cggaccaaacgctga
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