Tarenaya hassleriana (spider flower): 104821837
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Entry
104821837 CDS
T04125
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104821837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104821837
03012 Translation factors [BR:
thj03012
]
104821837
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104821837
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104821837
Translation factors [BR:
thj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104821837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
AAA_19
ATPase
nSTAND3
AAA_16
NPHP3_N
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104821837
NCBI-ProteinID:
XP_010551147
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MPYYSVIFRGYIRATAASASAPAGAASMAMQQYPFQLCRNPKFLLKPSSPVRSLHWFRTS
GLVTCRRSRRAKITCLSGGGGRASEAPLLDWRTVVLPYLQNQSSNYGRTAYYDCVSSDES
DTDVGSSSQQNQMANSTLDNIDQWRFKLTMLLRNNEEQEVVSRERKDRRDFEHLSALASR
MGLHSRQYSKVVVFSKTPLPNYRADLDDKRPQREVVLPFGLQSEVDANLHAFLNEKQARI
PKVPRSNSSDSLTDDGVYEQPEPPRQNSVAMERVLQRRSLQLRSKQQEWLDSPEGQKMLE
FRKTLPSYKEKDALLKAISENQVIVVSGETGCGKTTQLPQYILESEIEATRGASCSIICT
QPRRISAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNL
KGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFGGAPTMH
IPGFTYPVRAHFLEDILETTGYRLTQYNQIDDYGQEKGWKMQKQALAFKKRKSQIASAVE
DALENADFKGYSLRTRESLSCWSPDSLGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINS
LKDQLQAHPLLGDPSRVLLLASHGSMASSEQRLIFDRPPEGVRKIVLATNMAETSITIND
VVFVVDCGKAKETSYDALNNTPCLLPTWISKAAARQRKGRAGRVMPGECYHLYPRCVYDA
FADYQQPELLRTPLQSLCLQIKSLRLGSISDFLSRALQPPEPLSVQNAVEYLKIIGALDE
NENLSVLGKKLSLLPVEPKLGKMLILGAIFSCLDPIMTVVTGLSVRDPFLMPFDKKDLAE
SSKSQFAARDYSDHMALARAYNGWKEAEKEQSGYEYCWKNFLSFQTLKAMDSMRRQFFFL
LKDASLIDNVEDCNKLSHDDHLVRAIICAGLYPGICSVVNKDKSIALKTMEDGQVLLYSN
SVNANVPKIPYPWLVFNEKVKVNSVFLRDSTAVSDSILLLFGGKISSGGLDGHLKMLGGY
LEFFMKPSLADTYIGLKGELDELIHNKLLNPKLDIQLYNELISAMRLLVSEDQCEGRFVF
GRTSVAPTKKKLKDLSSHGGGDGGDNFKNHLQTLLARSGHGAPVYKTRPLKNNQFRAMVS
FNGLDFAGKPCGSKKLAEKDAAHEALLWLQGETNSSLGDLNHMSMLLKKNRGKRPRSASS
QWGWG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgccgtactattcggtgatttttcggggatatatcagagccaccgccgcatccgcctcc
gctcccgcaggtgctgcctccatggctatgcaacaatacccttttcagctatgtcggaac
cctaaattccttttaaagccctcgtctccggtgaggtccctgcattggttccggacttcg
gggttggtcacgtgccgccggagtcggagggcgaagatcacgtgcctgagcggcggtggc
ggccgtgcctcggaggcccctctgttggattggagaacagtcgttttgccgtacctgcag
aaccagagctctaactatggccggactgcttactacgactgcgtctcgagcgatgagtct
gatactgacgtcgggtcgtcatctcagcagaaccaaatggcaaattcgacccttgataac
attgatcaatggaggttcaaacttaccatgcttctccgaaacaatgaagagcaagaagtt
gtgtcaagggagagaaaggacaggcgcgatttcgagcatctctcagcattggcctccaga
atgggattgcatagccgtcagtattcaaaagttgttgtttttagtaaaactcctttgccc
aattatagagctgatcttgacgataagcgcccgcaaagagaggtggttttgccttttggc
ctacaaagtgaagttgatgccaatctgcatgctttcctcaatgagaaacaagcaaggatt
ccgaaggtgccaagatcaaacagtagtgacagtttaactgatgatggagtctacgagcag
cctgagcccccgaggcagaatagcgttgccatggagagggtacttcaaaggaggagtttg
caactaaggagcaagcaacaggaatggctggattctccagaagggcagaaaatgctagag
tttcggaaaacccttccttcatacaaagagaaagatgcactactgaaagccatttctgaa
aaccaggttatagttgtgtctggagaaactggttgtggtaaaaccacacaacttccgcag
tacattctagagtctgagatcgaggctacccgtggagcatcgtgcagcatcatctgtacc
cagcctagaagaatatctgctatttctgtttccgaacgagttgctgcagagcgaggcgag
caaataggagaatctgttggctataaagtgcggctggaaggaatgagaggaagagacacc
cgtcttcttttttgtactactggtgttttactcagaaggttacttgtcgatcgaaacctg
aaaggtgtgactcatgttatagttgatgagatccatgagcgtgggatgaatgaagatttt
cttctcattgtccttaaagaactccttcctcgtcgaccggatctgaggttgattttgatg
agcgccactttgaatgctgagctcttttcttcttattttggtggcgctccaaccatgcat
attccgggtttcacttaccctgtccgggcccatttcttggaggacatacttgagacaact
ggatacaggctgacacagtataatcaaattgatgactacggtcaagaaaagggttggaaa
atgcaaaaacaagctctagctttcaaaaagaggaaatcccagattgcttctgctgttgag
gatgcccttgagaatgctgactttaaaggttacagcttgcgcaccagagagtctctatca
tgctggagtcctgattcattgggctttaaccttattgagcatgtgctttgtcatattgtc
aagaaagagagacctggtgctgttttggtgttcatgactggttgggatgatattaattct
ttgaaggatcagctccaagctcatcctcttctgggagaccccagcagagttttgttgctt
gcaagtcatggatccatggccagttctgagcagaggttgatctttgatagacctccagaa
ggagttaggaaaatagttctggctactaatatggctgagacgagtatcaccatcaatgat
gtggtatttgtggttgattgtggaaaagcaaaagagacatcctatgatgcacttaacaac
actccttgtttgcttccgacgtggatctcaaaagcagcggctcgtcaaagaaaaggaaga
gctggtcgcgttatgcctggagaatgttatcacctttatcctagatgtgtttatgatgca
ttcgctgattaccagcaaccagaactcctaaggacacctttgcagtctctgtgtttacaa
atcaaaagtttacgacttggaagcatttcagacttcctttcccgggcattgcaacctcct
gaacctttatcggtccaaaacgctgtggaatatctgaagatcattggtgctcttgatgag
aatgaaaatttgtcggttttaggaaagaaattgtcactgcttccagtggagcctaaactt
gggaagatgcttattttaggggctatcttcagctgtctcgaccccataatgactgttgtt
actggtcttagtgttagagacccgttccttatgccatttgacaaaaaggatctagcagaa
tcatcaaaatcccagttcgctgcccgggattacagcgaccacatggccctggctcgagcg
tacaatggctggaaagaagctgaaaaagaacaatctggttatgagtattgctggaagaat
tttctctctttccaaactctgaaggccatggactccatgaggaggcaatttttctttctc
ctgaaggatgcttctctaattgataatgtggaagattgcaataagctgagccatgatgac
catcttgtccgggccataatctgcgcaggcttataccctggaatatgttctgttgtgaat
aaggataagtcaattgcacttaagacaatggaggatgggcaggtgcttctgtactcgaat
tctgtgaatgccaatgtaccaaagattccatacccatggctagtcttcaatgaaaaagtg
aaagttaactcagttttcctccgagattccactgctgtatctgactcgattcttcttttg
tttggaggaaagatatcttctggtggattggacggacatcttaaaatgctcggaggatat
ctcgagtttttcatgaaaccttccctggcagatacatacatagggttgaaaggagagctt
gacgaacttattcacaataagcttctgaatcccaaacttgatatccaactgtacaatgag
ctcatatcagctatgagattgcttgtgtctgaggaccagtgtgagggcaggtttgtgttc
ggccgcacatcagtggcccccacgaaaaagaagcttaaagacttgagcagtcacggagga
ggcgatggtggggacaacttcaagaaccatcttcagacattgctggcccgttcaggacat
ggagcacctgtgtacaagacaagaccgctgaagaacaaccagtttcgagctatggtttct
ttcaacgggttggatttcgctgggaagccatgtggtagcaagaaactcgcagagaaggac
gcagctcatgaggctttgctttggttacaaggagagaccaactcgagtctgggtgatctt
aaccacatgtcaatgctcttgaagaagaacagaggtaaaaggcctcggagtgcatcatct
caatgggggtggggttag
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integrated database retrieval system
