Tarenaya hassleriana (spider flower): 104822546
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Entry
104822546 CDS
T04125
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104822546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104822546
03012 Translation factors [BR:
thj03012
]
104822546
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104822546
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104822546
Translation factors [BR:
thj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104822546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
FoP_duplication
nSTAND3
T2SSE
DUF5128
ATPase
Motif
Other DBs
NCBI-GeneID:
104822546
NCBI-ProteinID:
XP_010552096
LinkDB
All DBs
Position
Unknown
AA seq
1033 aa
AA seq
DB search
MSLFSISPLSRFRLLLPSSLPFSFNHSLQLRQRIQIAALSSMPHGPNFRGGGRRGGRGGG
RGGRGGGGGGGGGRGEQRWWDPVWRAERLRQKQVEMEVLDENEWWNKIELMKRGGEHEMI
IKRNFSRNDQQTLSDMAYQMGLYFHAYNKGKTLVVSKVPLPDYRADLDERHGSTQKEIRM
STETERKLGSLLNKTQESRSSYCSSSAANQQDLTSSPVIKPIDSSSKLLDLSEKEKLSVT
FKERQERLKASDSIKALQAFREKLPAFKMRDKFLKAVSENQVLVVSGETGCGKTTQLPQF
ILEEEISSLRGADCNIICTQPRRISAISVSSRISAERGESLGESVGYQIRLESKHSDQTR
LLFCTTGVLLRKLVQDPNLTGISHLLVDEIHERGMNEDFLLIILHDLLPRRPDLRLILMS
ATINADMFSTYFGNAPTMHIPGFTFPVSEFFLEDVLEKTRYSIKSDCDSYQGSSRRRSRD
SDSKKDELTNMFEDLDINSHYKNYSSSTRHSLEAWSGAQIDLGLVEATIEHICRREGDGA
ILVFLTGWDEISKLLDNVKRNIFLGDSNKFLVLPLHGSMPTVNQHEIFDHPPPNKRKIVL
ATNIAESSITIDDVVYVIDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQPG
VCFRLYPKVIHEALPQFQLPEIIRTPLQELCLHIKSLQVGDIGSFLAKALQPPDPLAVKN
AIELLKTVGALDDVEELTPLGRHLCTLPVDPNIGKMLLIGAIFRCLNPALTIAAAMAYRS
PFILPLSRKEEADEAKRSFAGDSCSDHIALLKAFEGYRDAKREGCERDYCWQNFLSPMTL
RMMEDMRNQFLDLLSDIGFVDKSCGSNAYNQYSHDLEMVSAILCAGLYPNVVQCKRRGKR
TVFYTKELGKVDIHPGSVNASVHLFPLPYLVYSEKVKSTGVYIRDSTNISDYALLMFGGN
LIPSKTGEGIEMLGGYLHFSASKNVLELIRKLRGELDKLLYRKIEDPSFDISVEGKGVVS
AVVELLHSQNIRY
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcttctccatttctcctctctccagatttcgtcttctccttccttcgtctctt
ccgttttccttcaaccactctcttcagcttcgtcagcgaatccagatcgcagctttatcc
tctatgcctcacggtcctaatttccggggcggcggccgccgtggtggacgaggtggcggc
agaggaggacgcggcggcggcggaggtggcggtggaggccgtggggagcagcgttggtgg
gatcccgtgtggagagctgagcggttgcggcagaaacaagttgagatggaagttcttgat
gagaatgaatggtggaataagattgagctgatgaaaagaggaggggagcacgagatgata
ataaagcggaatttcagtcggaacgatcagcaaacactatctgacatggcttatcaaatg
ggactttacttccatgcgtacaataaagggaaaactcttgtggttagcaaagttcctctg
ccagattatagagcagatcttgatgaacgccatggatctacacagaaagagatacgaatg
tcaacggaaacagagagaaaacttggaagtctgttgaacaaaacacaagaatcaaggtct
tcatattgctctagttcggcagctaatcaacaggatttgacatcatcacctgtcataaaa
ccaattgattcttcttcaaaattactagatctttctgagaaagagaaattaagtgtcaca
ttcaaggaaaggcaggaaagactaaaggcaagtgacagtattaaagcacttcaagctttc
cgagaaaagctgcctgcttttaaaatgagagacaagtttcttaaagctgtttcagaaaat
caggtgttggtagtttctggagagacaggatgtggtaaaactacccaactgcctcaattt
atattggaagaagagatatcatctcttagaggtgctgattgcaacattatttgcacccaa
cctcggcgtatatctgccatatctgtttcatctcgtatttctgctgaaaggggagagtcc
ttgggtgaatctgtgggttaccagattcgtcttgaatcaaagcactctgatcaaacacga
ttgctgttttgcaccactggtgtattgcttcggaagctggtccaggatcctaatctaact
ggcataagccatttgctggttgatgaaattcatgaaagaggcatgaatgaagattttctg
ctaattatactgcatgatctccttcctcgacgcccggatttgcgtcttatcctgatgagt
gcaaccattaatgctgacatgttctcaacttattttgggaacgctccaactatgcacatt
ccgggtttcacatttcctgtttctgagtttttcttagaagatgtactggagaaaactcgc
tatagcatcaagtcagactgtgacagttatcaaggtagctcgagaagaagaagcagagat
tcggactcaaagaaagatgaactgactaatatgtttgaggatcttgacattaactctcac
tacaaaaattacagttcatccactagacactctcttgaagcttggtctggcgcacagatc
gatctgggtctggtggaggcaactattgaacatatttgccgtcgtgaaggtgatggagca
attcttgtcttcctcactgggtgggatgaaatctccaagttgcttgacaatgtcaaacga
aacatctttcttggtgattcaaacaagttcttagttcttcctctacacggttcaatgcca
accgtcaaccagcatgaaatttttgaccacccacctcctaacaagcggaaaatagttttg
gctactaacattgctgagagtagcattacgatcgatgatgttgtatatgttattgactgt
ggtaaagcaaaggaaactagctacgatgctttaaacaaggttgcctgtctcttaccatca
tggatttcaaaggcttcggctcaccagagacggggccgtgctggacgtgtccaacccgga
gtttgtttcaggttgtatccgaaagttatccatgaggcactgccccagtttcagctacca
gaaatcatccgaactcccttgcaagagttatgcctccatatcaaaagcttgcaggttggc
gatatcggatcctttttggcaaaggcacttcagccgcctgatcctcttgctgttaaaaac
gctattgagcttctcaaaacagtcggggctttagatgatgtggaagagctaactccactc
ggtcgacatctctgcacgctacctgtggacccaaatattggaaagatgcttctgatcgga
gctatcttccgttgcctcaatcctgctttgacgattgcggccgcaatggcctatcgcagc
ccatttatccttccattaagtaggaaagaagaagccgatgaagccaaaagatctttcgct
ggtgattcgtgcagtgatcacattgcgctccttaaggctttcgagggatatagggatgcg
aagcgcgaggggtgtgaacgagattattgttggcagaacttcctttccccaatgacgtta
cggatgatggaggatatgagaaaccagtttctggatcttctttcggatattggttttgtc
gacaaatcctgcggttcaaatgcgtacaaccaatacagccatgacctggagatggtgtct
gcgattctatgcgctgggctgtacccgaacgtcgtgcagtgtaaaagaagagggaaacgc
actgtgttctacacaaaagagttggggaaagttgatatacacccaggatcagtcaatgcg
agcgtccatctcttcccgcttccgtatttggtgtacagcgagaaggtcaagagtacaggc
gtttacatccgggactcgacgaatatatcggattatgccctgcttatgttcggcggaaac
cttatcccgagcaaaaccggggaaggtatagagatgttgggaggttatctccatttctct
gcctccaagaatgtcttggagctcatccggaaactgcgaggcgagctagacaagctactg
tacaggaagatagaggatccgagtttcgacatatcagtggagggaaaaggagtggtttca
gcagttgtggagttgttgcatagccaaaacattaggtattag
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integrated database retrieval system
