Tarenaya hassleriana (spider flower): 104822731
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Entry
104822731 CDS
T04125
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104822731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104822731
Enzymes [BR:
thj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104822731
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104822731
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
RRM_R3HCC1L
Motif
Other DBs
NCBI-GeneID:
104822731
NCBI-ProteinID:
XP_010552367
LinkDB
All DBs
Position
Unknown
AA seq
708 aa
AA seq
DB search
MNRHKRWPLRPLARALARSRFSSSSLSPAAAETAETSSASAAAFPLKHVTRSNFETTLSD
LRSHVHAADFVAIDLEMTGVTSAPWRESLEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRW
DSLSHSFVAYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNACVHEGISYLS
RLQEEEATKRLEMQYEDGDMDSAVEARELKLVRMADILFAERMKNTLSEWRSALLHGGNT
MSQSLRSSNDSAERLETVFYFMRPALSLKGFTSHQLRVIKLVVRKHFGDLVYIHMDNENS
CSQDFVVFSDSESDKENLMKEAKDERKKVVEGKIKSAIGFRHVIDLLSSEPKLIVGHNCF
LDIAHVYNKFVGPLPSTAEEFVSSINECFPHIIDTKVLLNVNQMLHLKMKKCSTSLSSAF
SLLCPQTAFSFASIGSDLVSQQRVRIEVEVDNVRYSNWSSGAKHEAGYDAFMTGCIFAQA
CSHLGVDFGGQRLAQNETLQNYINRLYLSWTNGDIIDLSTGQTTAEHRLINSVPKRFSKI
KYENVVLIWGFQPKLKAREIKECICKVFGPTSVTSIYHVDDTAVFVMFKNPEFVSDFLEL
KQQLQKNDGPVAVLHPLSKLLEGGNTCAADYEVYKEVCSSSISKTLFAEQAEAVGINGGT
RSVKSDAETERRPEEEEEASDNNNNNSNASDRVCEREYEDGRRRSLCN
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgccacaagcgatggcctttgaggcctctcgcgcgtgctctcgcacgctcccgt
ttcagctcctcttccctctctccggcagcggcggagacggcggagacatcgagcgcgtcg
gcggcggcttttccgttgaagcacgtgacgaggtcgaacttcgagacgacgctgtcggat
ctgcggtcgcacgttcatgcggcggatttcgtggcgatcgacctggagatgaccggcgtg
acgagtgctccgtggcgcgaatccttggagttcgaccgcttcgacgtccggtacctcaaa
gtcaaagactccgccgagaaattcgccgtcgttcagttcggcgtctgtcccttccgatgg
gactctctctctcactccttcgtcgcctacccgcacaatttcttcgtatttcctcgtcaa
gagctcacatttgatccgccagctcatgaatttctctgccaaacgacatccatggatttc
ctggccaagtaccaatttgatttcaacgcctgcgtacatgaaggaatatcttatttgtcc
agactacaagaggaagaggccactaagcgtctggaaatgcaatacgaggatggggacatg
gattcagcagtcgaagcaagagaactaaagctggtaagaatggcggatattctttttgcc
gaaagaatgaagaacaccctgagtgaatggcgatctgcgctgttgcatggtggaaatacg
atgtctcagtcactgaggagctcgaatgactcagcagagagactagaaaccgtgttctac
tttatgcgtccagctctcagtctgaagggtttcacttctcatcagctcagagtgattaaa
ttggttgtaaggaagcattttggtgatcttgtttacatacatatggataatgaaaactcc
tgttctcaagattttgttgtgtttagtgattcagaatcggacaaggaaaatctcatgaaa
gaggcaaaggatgaacgaaagaaagtggtagaaggaaagataaaatctgctattggtttt
cggcatgtgattgaccttctttcttcagagccaaagttgattgttggtcacaattgtttc
ctagatattgcacatgtatacaacaaattcgtgggtcctcttccttcgactgctgaggaa
tttgtatcctcgatcaatgagtgcttccctcacataattgacactaaagtactcttgaat
gtgaatcaaatgctgcacctgaaaatgaagaaatgcagcacttctttgtcctctgcgttt
tctttgttatgtccacaaaccgcattttctttcgcttcaataggctctgacttggtttcc
cagcaacgagtcagaatcgaggttgaagtggacaatgtcaggtattctaactggagttct
ggagcaaagcatgaagctgggtacgatgcattcatgacgggttgcatatttgcgcaggca
tgcagtcatctaggagtggatttcggaggtcaacgcttggcccagaacgaaactctacag
aactacatcaaccgtctctatcttagttggacaaatggcgatatcatcgacctaagcacg
ggccagacaactgcagagcatcggctgattaacagcgtccccaaacgattctccaagatc
aaatacgagaacgtggttctgatatggggtttccagccgaaactcaaggcaagggagatc
aaagaatgcatatgcaaagtctttggccccacatcagtcacctcgatctatcacgtggat
gacactgctgttttcgtcatgttcaagaacccagaattcgtgtcggacttcctggaactg
aagcagcaactgcagaaaaacgacggtcctgtggctgttctgcaccctctctcaaagctg
ctcgagggaggaaacacgtgtgcagctgattacgaagtgtacaaggaggtgtgcagctca
tccatctcgaagacattgtttgcggaacaagctgaggctgtcggtatcaatggcgggaca
agaagtgtaaagtctgatgcggaaacagaaagaaggccagaagaagaagaagaagcgtct
gataataataataataatagtaatgcatcagatagggtttgtgaaagggaatacgaggat
ggaaggaggaggagtttatgcaactaa
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