Tarenaya hassleriana (spider flower): 104825180
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Entry
104825180 CDS
T04125
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104825180
09122 Translation
03013 Nucleocytoplasmic transport
104825180
03015 mRNA surveillance pathway
104825180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104825180
03041 Spliceosome [BR:
thj03041
]
104825180
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104825180
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104825180
Spliceosome [BR:
thj03041
]
Complex C
Other components
EJC/TREX
104825180
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104825180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
104825180
NCBI-ProteinID:
XP_010555770
LinkDB
All DBs
Position
Unknown
AA seq
292 aa
AA seq
DB search
RFSTYLPDIKVAVFYGGVNVKIHKDLLKNECPHIVVGTPGRVLALARDKDLSLKNVRHFI
LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE
AKLTLHGLVQHYIKLSDMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPS
ICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR
VGRAGRFGTKGLAITFVSSAADSDVLNQLYERFEVDIKELPEQIDTSTYMPS
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
cggttcagtacatatctacctgatatcaaggtggcggtgttttatggtggagtcaacgtt
aagattcacaaagacttactgaagaatgaatgtcctcatattgttgttggcacacccggt
cgagtgcttgcacttgccagggataaggatctttccttaaagaatgtgaggcattttata
ctcgatgagtgcgataaaatgctcgagtcactcgacatgcgaagggatgtgcaggagatt
tttaaaatgactcctcatgataaacaagtaatgatgttctctgcaaccctcagcaaagag
atacgcccagtctgcaagaaatttatgcaagatccaatggaaatatatgttgatgatgaa
gccaagttgactcttcacgggcttgtacagcactacatcaaactaagcgatatggagaaa
aaccgaaagttaaacgaccttcttgatgccttggacttcaatcaagttgtcatctttgtg
aaaagtgtcagtagagctgccgagctgaacaagttactggttgaatgcaatttcccctct
atatgcattcattctggcatgtcccaagaagagagattgactcgttacaagggattcaaa
gaagggcacaagagaattcttgtggctactgacttggttgggagaggaattgacatcgag
cgtgtgaacatcgtcatcaactatgatatgcctgattctgctgatacttatctccacagg
gtcggtagagctggaaggtttggtaccaagggtctcgccatcacatttgtttcatccgct
gccgattcagatgtccttaaccagctttatgagcggtttgaggttgacataaaggaactt
cccgagcagatcgatacgtctacctacatgccgtcgtga
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