Tarenaya hassleriana (spider flower): 104825811
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Entry
104825811 CDS
T04125
Name
(RefSeq) uncharacterized protein LOC104825811
KO
K06100
symplekin
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104825811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thj03021
]
104825811
03019 Messenger RNA biogenesis [BR:
thj03019
]
104825811
Transcription machinery [BR:
thj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104825811
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104825811
U7-dependent histone pre-mRNA processing factors
104825811
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
AAA_lid_9
Motif
Other DBs
NCBI-GeneID:
104825811
NCBI-ProteinID:
XP_010556505
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
MLLTQKINKKNEEPNSCAWISCDVSVLQRRLQPIKTLTQSFAHSSKPCVFSDTVSPVGIP
NSAMAASALRDQALSLLAAANNHGDLAVKLSSLRQVKEILLLVDPSLSAELFPYLAELQS
SREPLVRKSLIEIIEKVGLRMMEHSYVLVGVLLALLRDNDPVVAKQSISSGTKFFCSVVE
EMALQFIHRGNVERWARELWTWLVKFKETAVAIIFEPGSVGVKVLALKFMETFVLLFTPE
ASDSEKLSNEGGQRRFNISWLSGGHPILNPSILVSDANRTVGVLLDLLQSAGHLPGALTT
TVVSCLAAVAKKRPVHYNTVLSALLDFHPNLEATKGCHAASVQYSIRTAFLGFLRCTISP
TVESRDKLLRALCAMNAADAAEQAIRQADKMIRNNERAARENWSGKTNQVMNHQNLSWDL
SMKRIMPQDDEDAPNGEVASKRVCYNPSRHSIPQVLSSDSPLDSVAVNGISSGGRNSDGD
LTPVEQMVAMIGALLAEGDRGAESLEILISKLHPDMLADIVITNMKHLPKNPAPLTKLSN
VPQNQSTGSLGNPAEISSSPSLKNSMPSPALQTQLPLPSHVAGGSSSTEVPSSNNMVVES
RRDPRRDPRRLDPRRANALVIQASLPVSEGKDSVSPEIDVSALPNKSLLAPILTEDARGP
AHRMTGVRSDNKLMESPEVPGINQLDGSEDDLAAPKDGVGFRKDKASSDIQLSPCRVDDD
IRETECSGAEAKYDLDSASPLEFDQHSPSTSNITASEDTYRELPSVPSYVELTIEQCRTI
GKLAIERIIRSHRHVSGLDSNKIRMALLARLIAKIDAGDDVAAVLREHILVDYREHMGHE
LVLHVLYHLHSTAMLDTDESPTCSTVYETFLIAVARSLLDVLPASDKSFSRLFGEAPHLP
DSAIKLLDDLCSSSDLDPNGREVRDSERVTQGLGAVWSLVIGRPNERQACLAIALKSSVH
SEDDIRAKAIRLVTNKLYHLTYVSQHIEQFATDMLLTAVNSETDFSQAGVVPQRVETEVE
NQRTSTSTSQVISSGTSDVGSQKDSQPSLDVSAMSFPEAQRLTSLFFALCKKKPSLLHLV
FEVYGRAPKPVKQAFHRHIPILIRALGSSYSELLQIVSDPPAGSENLLTLVLQVLTQETL
PPPDLIATVKHLYETKLKDVSILIPLLSSLSKDEVLPIFPRLVNLPLDKFQMALAHILQG
SAHTGPALTPAEVLIAIHGIVPEKDGPPLKKITDACSACFEQRTVFTQQVLAKALSQMVD
QTPLPLLFMRTVIQAIDAFPKLVDFVMEILSKLVSKQIWKLPKLWVGFVKCVSQTQPHSY
PVLLKLPPTQLENTLAKYPNLKPSLAVYANKPTVKASLPSSTLVVLGMPSEQDLQPLYDQ
PLHPSDASSSIHGATLT
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgttacttacgcaaaaaataaataaaaaaaatgaggaaccaaattcctgtgcttggatt
tcgtgtgatgtttctgtgttgcagcgacgtcttcaacccatcaaaaccctaacacagagt
ttcgcccactcctcgaagccttgtgtgttctccgacacggtttcgcctgtcggaatccct
aattcagcaatggcggcttcggctttgagggaccaggccctctctctcctcgctgcggcc
aataaccacggcgatttggcggtgaagctctcctctctccgacaggtgaaggagattttg
ttgttagtggacccgtctctttccgccgagcttttcccttatcttgcggagctccagtcg
tcgcgtgaacctcttgtccgtaaatcgcttatcgagattattgagaaggttggtttgagg
atgatggaacactcttatgttctagtgggtgtgttgctagcattgttaagggacaatgat
cccgttgtagcgaagcaatctatttcttctggcacgaaattcttttgcagcgtggtggag
gagatggcattgcagtttattcatcgcggtaatgttgagcggtgggcgagagaactatgg
acgtggctggttaagttcaaagaaactgccgttgctattatatttgagcctggttctgtg
ggagtgaaggttttggcgctaaaatttatggagacgtttgttttactttttactcctgaa
gcttctgattctgagaaactttctaatgaaggaggccagcggaggttcaacatttcctgg
ctttctggtggccaccccattctgaatccatcaattcttgtgtcagatgcaaataggaca
gttggcgttttattagatttgttacagtcagctggtcatcttccgggtgcattgacaaca
actgttgttagttgtcttgcagcagtagcaaagaagaggcctgtacattacaatactgtt
ctttctgcgttgctggatttccacccaaatcttgaagctacgaagggatgccatgctgca
agcgtccagtattcaattagaactgcctttctgggatttcttagatgtactatttcaccc
actgtagagtcgagggacaagctcctaagagctttatgtgcgatgaatgctgcggatgct
gctgaacaagcaatccgtcaagctgataaaatgattagaaataatgaacgtgctgcacgg
gaaaattggtcaggcaagactaaccaggtgatgaatcatcaaaatctttcttgggatctg
tcaatgaaacgaataatgcctcaggatgatgaggatgcacctaacggagaggttgcttcc
aagcgtgtatgctacaatcctagcaggcattcaattccgcaagttctatctagtgattct
cctctggactctgtggctgtcaatggcatttcctctggtggtcgtaattcggatggtgat
ttgactccagttgaacaaatggttgcaatgattggtgctttgcttgcggaaggagacaga
ggagctgaatcacttgaaattctcatttctaagctccatccagatatgcttgcggacatt
gtaataaccaacatgaagcacttgcctaagaatcccgctccattgacaaagctttcaaat
gtacctcaaaatcagtctactggttcactgggtaatccagctgagatttcatcatcccct
tctcttaaaaattccatgccttctccagctttgcaaacacaacttcctttaccttcacat
gttgctggaggatcatcatcgactgaggtgcctagctcgaataatatggttgtagaatct
agacgtgatccaagaagggatcctcgccgcctggatccaaggcgtgcaaatgcattggtc
atacaagcatcactacctgtttctgagggaaaagactcagtttcaccggagattgatgtc
tctgccttaccaaataagtccctcttggctcccattttgacagaagatgcaagaggtcca
gcacacagaatgacaggtgttcgaagtgataataaacttatggagagtccggaagtcccc
ggaatcaatcagcttgatggcagtgaggatgacttggctgctcccaaagatggtgtaggt
ttccgtaaggacaaagcatcttctgatattcaactttctccttgccgggttgatgatgat
atcagggaaacagagtgttcaggtgctgaagcaaagtacgatttggattcggcatctcca
ttagagtttgatcagcactctccttccacatcaaacataactgcctcggaggacacctac
cgagaattgccatctgttccatcatatgttgagctaaccatagagcaatgcagaactata
gggaagttggctattgaacgtataattagatcacataggcacgtgtctgggctggactct
aacaagattcgaatggcgttgcttgcgcggttgattgcaaagattgatgctggtgacgat
gttgcagcagtgctcagagagcacattcttgtggattatcgagaacatatggggcacgaa
cttgtgttacatgttctgtaccatctgcattctacagcaatgctggacacagatgaatcc
cctacctgttctactgtttatgaaacttttctcatagctgtggcacggtcgttgttggat
gttctccctgcttcagacaagtctttcagcagactttttggagaagctccccatttacct
gattcagccataaagctattggatgatctctgctcttcctctgatcttgacccaaatgga
agagaagtccgtgatagtgagcgtgtcacccaagggcttggtgctgtatggagtttagtt
atagggcgtccaaatgaacgacaagcatgcttagctatagctttgaagtcctctgttcat
tctgaagatgacatacgagcaaaagctatccgacttgtcacaaacaaactctatcacttg
acatatgtatcgcaacatattgagcaatttgcaacagatatgttgcttactgctgtaaat
tctgagacagatttctcacaagctggagttgttccacagagagttgaaacagaggttgaa
aaccagagaacatccacgagtacctctcaggttataagctctggaacatctgatgttggc
tctcaaaaggattcacaaccttctcttgatgtttctgctatgtcatttcctgaagctcag
agactaacttctttgttttttgctttatgtaaaaagaaacctagtctccttcacctcgtc
tttgaagtttatggacgagctccaaaaccagtaaaacaggcgtttcaccgacatattcct
attctgatacgggcactgggttcatcttattctgagctgctccaaatagtatctgatcct
cctgcaggaagtgaaaatttgttgacattggtactgcaagtattgacacaagaaacattg
cccccgccagatttgattgctactgtaaagcatctatatgaaactaaactaaaggacgtt
tccattcttattccattgttgtcttcgctctcgaaagatgaggttttgcctatctttcct
cggctcgttaatctgccactggataagttccaaatggcacttgctcacatattgcagggt
tctgctcacacgggtccagccctaacgcctgcagaagtactgattgctattcatggcatt
gttcctgaaaaggatggtcccccactcaagaagataacagatgcatgctcggcttgcttt
gaacaacgcactgttttcacacagcaagtcttggcaaaggccctcagccaaatggttgat
caaactcctcttccgctactcttcatgaggacagtaattcaggcaatcgatgcttttcca
aaactggttgattttgtcatggaaatcctctccaagctggtcagtaagcagatctggaaa
ttgccaaagttatgggtcgggttcgtgaaatgcgtctctcagacacagccacattcttac
cctgttttgttaaagttaccgccgacacaactggagaatacactggccaaatatccaaac
ctcaaaccttctctagctgtttacgcgaacaagccaactgttaaagcttctttacccagt
tcaactctcgtggttctcgggatgccaagtgagcaagatttgcaacctctgtacgatcag
ccattgcacccgtcggatgcgagttcttcaattcatggagcaacgttaacgtaa
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