Tarenaya hassleriana (spider flower): 104826337
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Entry
104826337 CDS
T04125
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104826337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104826337
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104826337
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104826337
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104826337
NCBI-ProteinID:
XP_010557284
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSSLLNSSINGSASNLSDGSGRSFSSSFSGQSGAASPVFHHAGTIQSLHNMHGNFNVPNM
AGTLGSRNSGLNSVPSAGIQQPNGNLSNGRFASNNIPVAIAQLSHGSSHGHSGVASRGTI
NGIGNLGFSSNTNGVGGSIPGILPTSAAIGNRNTVPGLGVSPILGNAGSRIVSSMGNMVG
GGNVGRTLSSGGGLSVPGIGSRLNLTANSGSGNLGQNRILGGVLPQGSSQVISMLGNSYP
IAGGPLSQNHIQAMNNLSSMGMLNDMNSNENSPFDINNDFPQLTSRPNSAGGPQGQLGSR
LKQGLGVSPIVQQNQEFSIQNEDFPALPGYKGPLVHLQLFPFSTGSNADYPMDLHQKEQL
HDNSISMMQSQHLSMGRSAGFNLGLYSSHRQQQQQQQQQHAQAVSSGSVSLHGSDMFSSS
HPAYHSQTGGHPGIGLRPMNSPNSVSGMGYDQLIQQYQQHQNPSQFRLQQMSAVSQPFRD
HGMKSMQSNPDRFGLLGLLSVIKISDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS
NEPAKGDPEFSVPPCYYAKNPPPLHLGYFAKFSVETLFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHKSWFIRIGEPLVKTNTYERGSYHCFDPNSFEVIRKENFVLHYEMLEKRPLLP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcttacttaattcctctataaacggatctgcctcaaatttatcagatggttct
ggaagatcttttagttcttctttctctggtcagtctggagcagcatctccagttttccat
catgccggaactattcagagccttcataacatgcatggaaattttaacgttcccaacatg
gcgggaacccttgggtcaagaaattcgggtctaaatagcgttccttctgctgggattcaa
caaccgaatggtaatctttcaaatgggaggtttgcgtcaaataatattccagtcgccatt
gctcagttatctcatggtagctctcacgggcactcaggagtcgctagtagaggaactata
aacggtataggaaaccttggattcagtagtaacactaatggagttggtggttccattcct
gggattcttcctacctctgcagccattggtaatcggaatactgtgccaggattgggagtt
tccccaattttgggaaatgcaggttctcggatagttagttctatgggaaacatggtcggc
gggggcaacgtgggcaggactttaagctctggtggagggttatctgtgcctggtatcggt
tcccgactaaatctgacagcgaacagtggatctggaaatttaggacaaaatcgaatcttg
ggtggagtacttccgcaaggatcttctcaggttatttccatgctgggaaattcctatccc
atagctggtggcccactttcccaaaatcatattcaagcaatgaacaatctgagctccatg
gggatgctgaatgatatgaactctaatgagaattctccgtttgatataaataatgatttt
cctcagctgacgagtcgccccaactctgctggtggtcctcaaggacaattggggtctcga
ttgaaacaaggccttggagtcagtcccatcgttcaacaaaatcaagagttcagcatccaa
aatgaagattttccggcattaccaggatataaaggtcccctggttcatctgcaattattt
ccgttttctacaggcagtaatgctgattatccaatggatttgcatcagaaagaacaactc
catgataattctatttcaatgatgcaatctcaacatttatccatgggaagatctgctggt
tttaacttaggactatattcatctcatcgtcagcagcagcagcaacaacaacagcaacat
gctcaagctgtcagtagcggtagtgtctccttacatggctctgacatgttctcatcttca
catccggcataccactcacagactggtggacatccgggaattggactaagacctatgaat
tctccaaactctgtctctgggatgggttatgaccagcttatccagcaataccaacaacac
cagaacccatcccagttccggttgcagcaaatgtcagcagttagccaaccattcagagat
catggaatgaaatcgatgcagtcaaatcctgatcggtttggcttgcttggtttgcttagt
gtgattaagatcagtgatcctgacttgacatctctagcacttgggattgacctgacaacg
ttgggcttaaatttgaactcgacggaaaatcttcacaagacattcggttccccatggtcc
aatgaacccgccaagggggatccagaattcagtgtaccgccttgttactatgcgaaaaat
cctccgccgctacatctagggtactttgcgaaattctcggtagaaacattgttttacata
ttctacagcatgccgaaagacgaagcacaattatacgcggctaatgaactttataacaga
ggttggttctaccataaggaacacaagtcatggttcatcagaatcggagagcctctcgtc
aaaacaaacacttacgaacgaggatcttatcactgcttcgatccaaactcatttgaagtc
atccgtaaggaaaattttgttcttcattacgagatgttggaaaagagaccgctgctgccg
caacattga
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