Tarenaya hassleriana (spider flower): 104826525
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Entry
104826525 CDS
T04125
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
thj
Tarenaya hassleriana (spider flower)
Pathway
thj03013
Nucleocytoplasmic transport
thj03015
mRNA surveillance pathway
thj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
thj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104826525
09122 Translation
03013 Nucleocytoplasmic transport
104826525
03015 mRNA surveillance pathway
104826525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thj03019
]
104826525
03041 Spliceosome [BR:
thj03041
]
104826525
03009 Ribosome biogenesis [BR:
thj03009
]
104826525
03012 Translation factors [BR:
thj03012
]
104826525
Enzymes [BR:
thj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104826525
Messenger RNA biogenesis [BR:
thj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104826525
mRNA cycle factors
Stress granule specific factors
104826525
Spliceosome [BR:
thj03041
]
Complex C
Other components
EJC/TREX
104826525
Ribosome biogenesis [BR:
thj03009
]
Eukaryotic type
90S particles
Helicases
104826525
Translation factors [BR:
thj03012
]
Eukaryotic type
Initiation factors
eIF-4
104826525
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
Flavi_DEAD
NAT10_TcmA_helicase
Utp25_C
CMS1
TniB
Motif
Other DBs
NCBI-GeneID:
104826525
NCBI-ProteinID:
XP_010557567
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MAAANVAHPVRGGGRRGGGAPDDDKLVFETTEGVEPITSFDHMGIKEDVLRGVYDYGFEK
PSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQIVDTSSREVQALILSPTRELAS
QTERTIQAIGLQSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAVKLLILDESDEM
LSRGFKDQIYDVYRYLPPDLQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIK
QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLSEKMRSNNFTVSSMHGDMP
QKERDEIMNQFRSGESRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG
RKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggcgaatgtggcgcatcccgtccgtggcggcggtcggaggggcggtggagca
ccggatgacgacaagctcgtcttcgagacgacggagggggtcgagcctatcacgagcttt
gatcacatgggtatcaaggaggatgtgcttcgcggtgtctacgattacgggtttgagaag
ccctctgcgattcaacagagggctgtgatgccgattctacagggccgcgacgttatcgct
caggcccaatcaggtaccgggaagacctccatgattgctctctctgtttgccaaatcgtc
gacacctcgtccagagaggttcaggccttgatattatccccaacaagagaactggcttca
caaacagagaggacaatacaggctattgggttacagagcgttggagaggatattaggaaa
cttgagcatggagtccatgttgtgtccgggactcctggtagagtctgtgacatgataaag
aggaggagtctacgtaccagagctgttaaactattgattcttgacgaatcagatgaaatg
ttgagcagagggttcaaagaccaaatttatgatgtttatagatatcttccaccagatctt
caggttgtcttggtttctgctactcttcctcatgagattttggagatgactaacaagttt
atgacagatcctgtgaggatacttgtgaagcgtgatgagttgactctcgaaggaatcaaa
caattttttgtggctgtcgagaaagaagagtggaaatttgataccctgtgtgatctttat
gacacgctcactattactcaagctgttattttctgcaatacgaaacgaaaggtggattgg
cttagtgagaagatgaggagtaacaatttcactgtatcatcgatgcatggggacatgcct
cagaaggagagagatgaaatcatgaatcagtttcggtctggtgaaagccgtgttctaatc
actacggatgtctgggcacgaggaattgatgttcaacaagtttctcttgtcatcaattat
gatctgcccaataaccgtgagctttacatccatcgtattggacgttcgggccgttttggt
cgcaagggtgttgccataaactttgtgaagagcgatgacatcaagatcctccgggacatc
gagcagtactacagcacacagattgatgagatgcccatgaacgttgctgatcttatctga
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integrated database retrieval system
