Thauera sp. K11: CCZ27_02980
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Entry
CCZ27_02980 CDS
T05106
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
thk
Thauera sp. K11
Pathway
thk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CCZ27_02980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thk03021
]
CCZ27_02980
Transcription machinery [BR:
thk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CCZ27_02980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
Halogen_Hydrol
Motif
Other DBs
NCBI-ProteinID:
ATE59058
LinkDB
All DBs
Position
complement(640815..642797)
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AA seq
660 aa
AA seq
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MAREKAKDSRKDSPKGRVSKAKDKTAQVVESPEVAPLDAEVRRTRLKTLITLGKERGYLT
YAEISDHLPDDVADAEQIEGIIATFNNMGIQVYDEAPAAEDLLMSDSVATTVDEDVAEEE
AEQALSSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACPT
TIAEMLDIVDKVTRDEMRIDELVDGLIDPNASAEEAELAEADEEAAATEEAGEEDDNEDE
DEEGSSAESANAASLLQLKTDALARFDVIRGLYSKKMDVLARKGSQDTNYLLLQQQISDE
LLNIRFTAKAIERLCDSVRHMVEQVRAHERHILHLCVDRAGMPRQHFIKVFPGQETNLDW
LKEEIAAGKSYAEGLMRAHPAVLEEQQKLINMQDKIGIPLKELKDINRQMSTGEAKMRRA
KREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAEKMEMPEEKIR
KIMKISKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAAMYSGLRDATSEVLDSLTPRE
AKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLDNEA
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcgaaaaagccaaagattcgcgcaaggacagcccgaaaggacgagtctcaaag
gccaaggacaagaccgcccaggtcgtcgaaagccccgaagttgcaccgctcgacgccgag
gtacgacgcacccgactgaagaccctgatcacgctcggcaaggagcgcggctacctcacg
tacgccgagatcagcgaccacctgcccgacgacgtggccgacgccgagcagatcgaaggc
atcatcgccaccttcaacaacatgggcatccaggtctacgacgaggctccggccgccgaa
gatctgctgatgtccgacagcgtcgccaccacggtcgacgaagacgtcgccgaggaagaa
gccgaacaggcgctgtcctccgtcgactcggaattcggccgcacgaccgacccggtgcgc
atgtacatgcgcgagatgggcaccgtcgagctgctcacccgcgagggcgagatcgaaatt
gccaagcgcatcgaggatggcctcaagcacatggtgcaggccatctccgcctgcccgacg
acgatcgccgaaatgctcgatatcgtcgacaaggtcacgagggacgagatgcgcatcgac
gaactcgtcgacggcctgatcgatcccaacgcctcagccgaggaagccgaactcgccgaa
gccgacgaggaagccgccgcgaccgaggaagccggggaagaagacgacaacgaggacgag
gacgaagaaggcagcagcgccgagagcgccaacgccgcctcgctgctgcaactgaagacc
gacgcgctcgcccgcttcgacgtcatccgcggcctgtactccaagaagatggacgtgctg
gcgaggaagggttcgcaggacaccaactacctgctgctgcagcagcagatctcggacgaa
ctgctgaacatccgcttcaccgccaaggcgatcgagcggctatgcgactcggtgcgccac
atggtcgagcaggtccgcgcccacgagcgccacatcctgcatctgtgcgtggatcgcgcc
ggcatgccgcgccagcacttcatcaaggtcttcccgggccaggaaaccaacctcgactgg
ctgaaggaagaaatcgccgccggcaagagctacgccgagggcctgatgcgcgcccatccc
gcagtgctcgaggagcagcaaaagctcatcaacatgcaggacaagatcggcatcccgctg
aaggaactcaaggacatcaaccgccagatgtccaccggcgaagccaagatgcgccgcgcc
aagcgcgagatgaccgaggccaacctgcgcctcgtgatctcgatcgccaagaagtacacc
aaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcg
gtcgataaattcgaataccgccgcggctacaagttctcgacctatgcgacctggtggatc
cgccaggcgatcacgcgctcgatcgccgaccaggcgcgcaccatccgcatcccggtgcac
atgatcgagacgatcaacaagatgaaccgcatcagccgccagatcctgcaggaaaccggc
caggaaccggaccccgccacgctggccgagaagatggaaatgcccgaggagaagatccgc
aagatcatgaagatctccaaagagcccatctccatggaaacgccgatcggcgacgacgac
gattcgcacctgggcgatttcatcgaggataccgccacgctggcaccgtccgacgccgcc
atgtactccgggctgcgggacgccacgtcggaagtgctcgactcgctcacgccgcgcgag
gcaaaagtcctgcgcatgcgtttcggcatcgagatgaacaccgaccacacgctggaagaa
gtcggcaagcaattcgacgtcacccgcgagcgcatccgccagatagaagccaaggccctg
cgcaagctgcgccatcccagccgttccgagaagctgcgcagcttcctcgacaacgaagcc
tga
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