Thauera sp. K11: CCZ27_22410
Help
Entry
CCZ27_22410 CDS
T05106
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
thk
Thauera sp. K11
Brite
KEGG Orthology (KO) [BR:
thk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thk03019
]
CCZ27_22410 (hrpA)
Enzymes [BR:
thk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CCZ27_22410 (hrpA)
Messenger RNA biogenesis [BR:
thk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CCZ27_22410 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
AAA_30
nSTAND3
FtsK_SpoIIIE
NACHT
AAA_23
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
ATE62368
UniProt:
A0A290ZTN8
LinkDB
All DBs
Position
5137046..5141191
Genome browser
AA seq
1381 aa
AA seq
DB search
MRVEHDSRRTPGAPSFDDCLSADRPRLRRMARDLRRPAGERQEARAAERRARLQAEFDAL
LERSRAALAARIAALPKPRFPAELPVSGRREEIAAALAAHQVIIVCGETGSGKTTQLPKI
CLALGRGAAGLIGHTQPRRLAARATASRIAQELDSPLGQAVGYKIRFTDKLSASSHIKLM
TDGILLAETQTDPLLAAYDTIIIDEAHERSLNIDFLLGYLRTLLPKRPDLKLIVTSATLD
ADRFARHFADAAGRAAPVIEVSGRLYPIELRYRPVEADEDQAAPARADDRAAQRKDRERG
RDLLDALVDAVDEAQRCGPGDVLVFLPGEREIREAAEALRKAHHLPGTEILPLFARQSAQ
EQARVFASSGGRRVVLSTNVAETSLTVPGIRYVVDTGLARVKRYSPRNKVEQLQIEKVAQ
SAAQQRAGRCGRVMDGICFRLYGEDDFARRPAHTDPEILRSSLAGVILRMKSLKLGAVED
FPFIDPPGSRLIGDGYALLTELGAVTDDDERTLTPVGRELATLPLDPKVGRMILAARDRG
CLAEVVVIAAALSVQDPRERPQDSPGAADQAHARFRGGEQDQRSEFLWYLHLWKAWDEVQ
RHESSSKQKAWCKKHFLSALRMREWRDVHAQLHVLCAEHGWKENAQPANYEAIHKALLSG
LLGHVGCKVEDASGPQAGSYLGARGIKFWPHPGSALAKKAGKWIMAAELVETSRLFGRCI
ARIEPEWVEEVGAHLLKRSVFEPHWSKSAGSVRAWERGTVHGLVLYARRGVAYRDADPKL
CRELFIRDGLVAGEIAEGAARSMPFFAHNQRLVAEIERLEHKSRRPDVLVDETLIEAFYD
SRLPAGVLDLASFEAWRKEAEAREPRLLHLTRDQLMRHDAEGVTTDRFPARFEVLGQKLA
LAYLHKPGEADDGVTVTVPLAMLNQVSANRCEWLVPGLLEEKITALLKTAPQKHRHRLQP
MADSAAAFMAAFEAGEFDTGEPLLKALQRFVEERVQLKLPLESFRPENLKPHCFMNFRVI
DEHGRMLGQSRNLAELRTRFREQVAARFSGAKIGGAMAAALSQAGGPAVAVAGEGRAPGA
GEGRSPAPQAGRRDAPPAPEGFTAWTFGPLPELLEVKVAGRDVIGFPALHDDGDCVSLRP
YDTPEEAARVHRRGLARLFALSLKDQVRAIEKLPGLRELALQYMNFGTEAELKGRLVEAT
LTRCCLLEPLPADAESFARRCAEAKPRVTLVAQEFMRLAGQLVTEHAGLQKRLAGLKTVP
ELAADMQAQLAALLPGDFLTAFPWERLSHFPRYLKAAAVRLDKFRNNPARDAQLMAEWKT
LAQAWEREHAAKRRAGVADPFLDDFRWLLEELRVGQYAQELRTPMPVSAKRLQKIWESRP
R
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttgaacacgacagcagacgcacgcccggcgcgccctccttcgacgactgcctg
agcgcggaccgtccgcgcctgcgccgcatggcgcgcgacctgcgccggccggccggcgag
cggcaggaggcgcgcgccgcggagcgccgggcgcggctgcaggcggagttcgatgccttg
ctcgagcgttcgcgcgccgcgctcgccgcgcgcatcgcggcgttgccgaaaccccgcttt
ccggccgaactgccggtctcgggccggcgcgaggagatcgccgcagcgctcgccgcgcac
caggtcatcatcgtctgcggcgagaccggctcgggcaagaccacgcaactgcccaagatc
tgcctggcgctgggccgcggcgcggcgggcctgatcggccacacccagccgcgccggctg
gcggctcgcgccaccgcgagccgcatcgcgcaggagctggacagcccgctcggccaggcg
gtgggctacaagatccgcttcaccgacaagctgagcgcgtccagccacatcaagctgatg
accgacggcatcctgctcgccgagacgcagaccgatccgctgctcgccgcctacgacacg
atcatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcctgctcggctacctg
cgcacgctgctgccgaagcggcccgacctgaagctgatcgtgacgtcggccacgctcgat
gccgaccgcttcgcgcggcacttcgccgatgccgccggacgggcggcgccggtgatcgaa
gtgtccggccggctctatccgatcgaactgcgctaccgcccggtggaggcggacgaggac
caggccgcgccggcgcgtgccgacgatcgcgccgcgcagcggaaggacagggagcgcggc
cgcgacctgctcgatgcgctggtcgatgcggtcgacgaggcgcagcgctgcggcccgggc
gacgtgctggtgttcctgcccggcgagcgcgagatccgcgaggccgccgaggcgctgaga
aaggcccatcacctgcccggtaccgagatcctgccgctgttcgcgcgccagtcggcgcag
gagcaggcgcgcgtgttcgcctcctccggcggccgccgcgtggtgctgtccaccaacgtc
gccgagacctcgctgacggtgcccggcatccgctacgtggtcgacaccggcctggcgcgg
gtcaagcgctattcgccgcgcaacaaggtcgagcaactgcagatcgagaaggtcgcgcag
tcggcggcgcagcagcgcgccggccgctgcggccgggtcatggacggcatctgcttccgc
ctctacggcgaggacgatttcgcccggcgcccggcgcacaccgaccccgagatcctgcgt
tcgtcgctcgccggcgtgatcctgcgcatgaagtcgctgaagctgggtgcggtggaggat
tttcccttcatcgatccgcccggctcccggctgatcggcgacggctatgcgctgctgacc
gaactcggcgccgtcaccgacgacgacgagcgcacgctgacgccggtcggccgcgaactc
gccacgctgccgctggaccccaaggtcggccgcatgatcctcgccgcgcgcgatcgcggc
tgcctggccgaggtagtggtgatcgccgccgcgctgtcggtgcaggacccgcgcgagcgc
ccgcaggacagcccgggggcggccgaccaggcgcatgcgcgctttcgcggcggcgagcag
gaccagcgctcggaattcctgtggtacctgcatttgtggaaggcgtgggacgaagtgcag
cgccacgagtcgtcgagcaagcagaaggcgtggtgcaagaagcacttcctttccgccctg
cgcatgcgcgagtggcgcgacgtgcatgcgcaactgcacgtgctgtgcgccgaacacggc
tggaaggagaacgcgcagccggcgaactacgaggctatccacaaggcgctgctgtccggt
ctgctcggccacgtcggctgcaaggtggaagacgcctcggggccgcaggcgggcagctat
ctcggcgcgcgcggcatcaagttctggccgcatccgggttcggcgctggcgaagaaggcg
ggcaagtggatcatggcggccgaactggtcgagacctcgcgcctgttcggccgctgcatc
gcgcgcatcgagccggaatgggtggaggaagtcggcgcgcatctgctcaagcgctccgtg
ttcgagccgcactggtccaagagcgcgggcagcgtgcgcgcctgggagcgcgggacggtg
cacggcctggtgctgtatgcgcggcgcggcgtggcttaccgcgacgccgatccgaagctg
tgccgcgagcttttcatccgcgacgggctggtggcgggcgagatcgccgagggcgcggcg
cggtcgatgcccttcttcgcccacaaccagcgcctggtggcggagatcgagcgcctcgag
cacaagtcgcgcaggcccgacgtgctggtcgacgagacgctgatcgaggctttctacgac
agcaggctcccggccggcgtgctcgatctggcctccttcgaggcttggcgcaaggaggcg
gaggcgcgcgagccccggctgctgcatctgacgcgcgaccagttgatgcgccacgatgcc
gagggcgtgaccaccgaccgctttccggcccgcttcgaggtgctcggccagaagctggcg
ctcgcctacctgcacaagccgggcgaggccgacgacggcgtcaccgtgacggtgccgctg
gcgatgctgaaccaggtgtccgccaaccgctgcgaatggctggtgccgggcctgctggaa
gagaagatcaccgcgctgctcaagacggcgccgcagaagcaccgccaccgcctgcagccg
atggccgacagcgccgcggccttcatggcggccttcgaggccggcgagttcgacaccggc
gagccgctgctgaaggcgctgcagcgcttcgtcgaggagcgcgtgcagctcaagctgccg
ctcgagagcttccggcccgagaacctgaagccgcactgcttcatgaacttccgcgtcatc
gacgagcatggccgcatgctcggccagtcgcgcaacctggccgaactgcgcacgcgtttt
cgcgaacaggtggcagcgcgcttcagcggcgcgaagatcggcggtgccatggccgcggcg
ctgtcgcaggcaggcggcccggcagtcgcggtggccggcgaggggcgggcgccaggggcg
ggggaggggcggagcccggcgccgcaggcgggcaggcgggacgcgccaccggcgccggag
ggcttcaccgcctggactttcggcccgctgcccgaactgctcgaggtgaaggtcgccggc
cgcgacgtgatcggcttcccggcgctgcacgatgacggcgactgcgtgtcgctgcgcccc
tacgacacgcctgaagaggcggcgcgcgtccatcgcagggggctggcgcgcctgttcgcg
ctgagcctgaaggaccaggtgcgcgcgatcgagaaactgccggggctgcgcgaactggcg
ctgcagtacatgaacttcggcaccgaggccgaactcaaggggcggctggtcgaggcgacg
ctgacgcgctgctgcctgctggaacctctgcctgccgacgccgaatcttttgcccggcgg
tgcgcggaagccaagccgcgcgtcacgctggtggcgcaggagttcatgcgccttgccggc
cagctcgtcaccgaacatgccggcctgcagaagcggctcgccggtctgaagacggtcccg
gaactggctgccgacatgcaggcccaactcgccgccctgctgcccggggacttcctcacc
gccttcccgtgggagcgcctgtcccacttcccgcgctacctgaaggcggcggcggtgcgc
ctcgacaagttccgtaacaacccggcgcgcgacgcccagttgatggccgagtggaagacg
ctggcgcaggcatgggagcgcgagcatgccgccaagcgccgtgcgggcgtcgccgatccg
ttcctggacgatttccgctggctgctcgaggaactgcgcgtgggccagtacgcgcaggaa
ctgaggacgccgatgccggtgtcggccaagcggctgcagaagatctgggaaagccggccg
cgctga
DBGET
integrated database retrieval system
