Tetragenococcus halophilus NBRC 12172: TEH_00810
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Entry
TEH_00810 CDS
T01640
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thl
Tetragenococcus halophilus NBRC 12172
Pathway
thl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TEH_00810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thl03021
]
TEH_00810 (rpoC)
03400 DNA repair and recombination proteins [BR:
thl03400
]
TEH_00810 (rpoC)
Enzymes [BR:
thl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TEH_00810 (rpoC)
Transcription machinery [BR:
thl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TEH_00810 (rpoC)
DNA repair and recombination proteins [BR:
thl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TEH_00810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-GeneID:
11261424
NCBI-ProteinID:
BAK93408
UniProt:
A0AAN1VPV1
LinkDB
All DBs
Position
92961..96614
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFENMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYAVIDPGNTSLEKKQLLTEREYREKREQYGQEFNAAMGADAIRQLLE
SVDLDSEADELKETLKTASGQKRTRAIRRLDILEAFRTSGNEPSWMVMDVVPIVPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVICVGPFLKMYQCGLPKE
MAIELFKPFVMRELVKRELASNVKNAKRKIERQEDDVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLACEAYNADFDGDQMAVHVPLSEEAQAEARVMMLAAQHIL
NPKDGKPVVTPSQDMVLGNYYLTLEEAEREGEGMILRDMNEAVTAWKNGYVHLHSRVAVD
PERLGGKPLTDFQKGRLMVTTVGKIIFNTIMPAEFPYLNEPTDFNLTVQTPDKYFIDAGT
DIPAHIKEQDLIEPFKKDNLEDIIAEVFKRFKVTETSRMLDRMKDLGYSHSTHAGITVGI
SDITVLQEKEELINEAHKQVATVSKQFRRGLITDDERYERVIDIWNEAKDNIQLKLSKSL
GNQNPIYMMSDSGARGNISNFTQLAGMRGLMAAPSGQIMELPIISNFREGLTVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEIEAIKEGNEIIEPLE
ERLVGRYTSKAVYHPETGEVIVEANDLINEVEAKQIVNAGIEKVTIRSAFTCNSKHGVCR
LCYGRNLATGNEVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGEAVVTEVTGEVTEVAEDAATRTKEVTVTGETDTRTYTVPYTARMKISEGDHIH
RGAPLTEGSIDPKHLLQVRDVLSVENYLLREVQRVYRMQGVEISDKHVEVMVRQMLRKVR
VMDPGDTDILPGTMMDIADFRDQNYNVLVTGGIPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKQDPLLGLKENVIIGKTIPAGTGMPRYRNMEPKEVNTASENVYSIS
DIEAQMAAEDALNETQS
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaaatatgcaaataggcttggcttctcccgaaaaaatt
agaagctggtcttatggcgaagtcaaaaaacctgagaccattaactatcgtacgttaaaa
cctgaacgtgagggtttatttgatgagcgtattttcggtcctacaaaagactgggaatgt
gcttgtggaaagtacaagcgaatccgttataagggtattgtttgcgatcgttgtggggta
gaagtaacacgttcaaaagttcgtcgtgaacgaatgggacatattgaactagctgctcct
gtatctcatatctggtactttaaaggtatcccatctcgtatggggcttgttttagacatg
agtccacgcgcattagaagaaattatctattttgcttcttatgctgttattgacccaggt
aataccagcttagaaaagaaacaattgttgactgagcgtgaatatcgtgaaaaacgcgaa
caatatggacaagaatttaacgctgcaatgggtgctgatgcgatcagacaactattggaa
agcgtagatttagatagtgaagcagatgaactaaaagaaaccttgaaaactgcttcgggt
caaaaaaggacaagagctattcgccgtttggatatcttggaagctttccgtacgtctgga
aatgaaccaagctggatggtaatggacgttgtcccaattgtaccgccagatttacgacca
atggtacaattagaaggtggacgttttgctacttctgatttaaacgatttatatcgtcgt
gttattaaccgtaataaccgattgaaacgtttgttggatttaaacgcacctaatattatt
gttcaaaatgaaaaacgtatgttgcaagaagcagttgacgctttgatcgataatggtcgt
cgtggtcgtcctgttgcaggaccaggaaatcgtccgttgaagtctctttctcatatgcta
aagggaaaacaaggacgcttccgtcaaaacctattaggtaaacgggtagactattctgga
cgttcagttatctgtgttggaccatttttgaaaatgtatcaatgtggattgccaaaagaa
atggcaatagaattatttaagccatttgttatgagagaattagttaaacgtgaattagct
tctaacgtaaaaaatgctaaacgtaaaattgaaagacaagaagacgatgtgtgggacgta
ttagaagatgttattaaagagcatcctgtactattaaaccgcgcacctacgcttcaccgt
ctaggtattcaagcttttgaacctgtattagtagaaggacgcgctattcgtttgcatcct
ctagcttgtgaagcttacaatgctgactttgacggggaccaaatggctgttcacgtacct
ctaagtgaagaagcccaagctgaagctcgagtaatgatgttagctgctcaacatattttg
aatccaaaagatggaaaaccagttgttacgccatcacaagacatggttttagggaactac
tacttaacattagaagaagcagaacgcgaaggagaaggtatgattcttcgtgacatgaac
gaagcagtcactgcttggaaaaatggctacgttcacttgcattctcgtgtagcagttgat
cctgaacgtttaggtggtaagccattgacagacttccaaaaaggtcgtttgatggtgaca
actgttggtaaaattatctttaataccattatgccagcagaattcccttacttgaatgaa
ccaactgattttaatttaaccgtgcaaacgccggataaatacttcattgatgctgggaca
gatattcctgctcacattaaagagcaagatttgatagaaccattcaaaaaagataatttg
gaagatattatcgctgaagtttttaaacggtttaaggtaaccgaaacttcacgtatgctt
gaccgtatgaaagatctaggttatagtcattccactcatgctggtattacggttggtatt
tctgatattactgttttacaagaaaaagaagaacttattaatgaagcgcacaaacaagtt
gctactgtttcaaaacagttccgtcgtggtttgattactgatgatgaacgttatgaacga
gtgattgatatttggaatgaagccaaagataatattcaattgaaattatcgaaatctctt
ggtaaccaaaacccaatttatatgatgtctgactcgggtgcccgcgggaatatttctaac
tttacccaacttgctggaatgcggggcttgatggcagctccaagtggtcagatcatggaa
ttaccgattatttctaacttccgtgaaggcttaactgttttggaaatgttcatttctact
cacggtgcacgtaaaggtatgactgatacagccttgaagactgcggactcaggttacttg
acacgtcgtttagtggatgtagcacaagatgtgattgttcgagaagacgattgtggaaca
gatcgtggccttgaaatcgaagcgattaaagaaggtaatgaaattattgagcctttggaa
gaacgtctcgtaggtcgttatacaagcaaggctgtttaccatcctgaaactggggaagta
attgttgaagccaatgacttaattaatgaagttgaagctaaacaaattgtaaatgctggt
attgaaaaagtaacaattcgttcagcatttacttgtaatagtaagcatggcgtttgtcgt
ctttgctatggacgtaacttggctactggtaatgaagtagaagttggggaagccgtaggt
actgttgctgcacaatctattggtgaacctggtacccaattaacaatgcgtactttccat
actggtggtgttgctggtgatgatattactcaagggctaccacgtatacaagaaattttt
gaagcacgtaaccctaaaggggaagcagtggtcactgaagtaacaggagaagttactgaa
gtagctgaggatgccgctactcgtacaaaagaagttacagttactggcgaaacggataca
cggacttatacggtgccgtatactgcacgtatgaaaatttctgaaggagatcacatccat
cgtggagcaccgttaacagaaggttctatcgatccgaaacacttattgcaagtgcgtgat
gtactttctgtagaaaattatctgttacgtgaagtacaacgtgtttatcgtatgcaaggg
gtagaaattagtgacaagcacgttgaagttatggtccgtcaaatgttgcgcaaggttcgt
gtcatggatccaggggatacagatattctacctggtactatgatggatattgcagacttt
agagatcaaaattataatgtcttagttactggtggcattcctgcaacttctcgtccagta
ctccttggtattacgaaggcttctctggaaactaacagcttcttatcagctgcttccttc
caagaaacgactcgtgtgctaacagatgctgcaattcgcggtaaacaagatccacttctt
ggtctaaaagaaaatgttattattggtaagactatcccagctggtaccgggatgcctcgt
taccgtaatatggaacctaaagaagtaaatacagctagcgaaaatgtttatagtatttct
gatattgaagcacaaatggctgcagaagatgcattaaatgaaacacaaagctaa
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