Tetragenococcus halophilus NBRC 12172: TEH_06730
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Entry
TEH_06730 CDS
T01640
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
thl
Tetragenococcus halophilus NBRC 12172
Brite
KEGG Orthology (KO) [BR:
thl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thl03400
]
TEH_06730 (sbcC)
DNA repair and recombination proteins [BR:
thl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TEH_06730 (sbcC)
Archaeal homologous recombinant proteins
TEH_06730 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
Cyclase_polyket
Motif
Other DBs
NCBI-GeneID:
11261457
NCBI-ProteinID:
BAK94000
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All DBs
Position
692117..695230
Genome browser
AA seq
1037 aa
AA seq
DB search
MQPRKLMLKNFGPFLHETVDFSEFQSAGLFLISGKTGAGKTTIFDGMTFALFGETSGRLR
TGKEMRSTFAPAQELTEVRFSFEHQEMIYEIIRSPEQTVGKKKGEGFTKQTAKVHLSIFS
TSGALLTQYSKKGEVDRFITELLNVNAKQFFQIVLLPQGEFRNFLVASSNDKEKLLRNLF
GTQLYQRLNEWLHAQQKNVEKELTRQTDQLENLRQQFQGEFESPASYQETLLKWQDALEQ
LEREIVEEKRQLEKQKEMKKEAEKAFYKGKEITNALDEYDKLIQKQETLKAKESKMEETK
QYFAQLSWINEKKDLLRQEDDYGKEIEEINHSLKDIKQQLKKNQSEQEALRKQKEDYEKW
QTQQEDKQYALKRINDELPTVQKINQLAKQSEQLYASMTQRQNEIDTLKKQLEKNQSLKE
DLSQKTQQKPALQEEKLQLYRYDELVRHFVEAQAEKDSQKTAYKKTQEEIERLKQQLEVY
QQAEKNSKDQLTTARSENAKMQIARLQLLLKEEEPCPVCGSLHHDSVYAKQHSYTLAEIT
QNEENLAQSEETYAQTLEEKQKTSAALESRRKEQEQISVKLTKAQENLQELTEECEATLE
ISIEKTEPKAYLQKWQDKLNKEIKEIEEAEKKQNLLIEEAEKTSAKLSQLQEQYSNDKEE
VTKLSAEQDTLKGQLSYQNTEDLEKQKSQLEEEITTIQKKIDQYKQEEEKIQTDLTTLNE
RNSQYQQQVRRSQEKRNGIKQKLDQAIQKSSFVSSEEEMRQLLPELKQLESLREIIEQDQ
NEREYTKKRLHELKDFKEKVRPDLKNLEKKRQDAEEKEASVQTSLIQKQEVLRSNQKIMA
DFQQLYATNQNEMENMSQIKQLAETMNGDNLERLGIERYVLQSFFAEVLEVANVRLNKLT
QGRYQFLLSNEKGSYKKSTGLEISIYDDHAGTSRRAHTLSGGESFIAALALALSLGDVIQ
SHAGGVLIETLFIDEGFGSLDEEALEMAIEALEMVEDEGRMIGIISHVQELKNRITQQMI
VKTDGSGQSYITNRIVD
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctagaaaattaatgttaaaaaactttggcccttttttgcatgaaaccgttgat
ttcagtgaatttcaatctgccggattatttttgatctctggtaagacaggagcaggaaaa
accacaatttttgatggcatgacttttgctttattcggggagacttcggggcgtttacgt
acaggtaaagaaatgcgttctacttttgctccagcacaagaactaacagaagttcgcttt
agttttgaacatcaggaaatgatttacgaaattatacgttctcctgaacaaacggtgggc
aagaaaaagggtgaaggatttaccaagcagactgctaaagttcatttatcgattttttct
acttctggagctttgcttacgcaatatagtaaaaaaggtgaagtagaccgttttattact
gaactactgaatgttaacgcaaaacaattcttccaaattgttttattgccgcaaggagag
tttcgtaattttttagtggcttctagtaacgataaagaaaagcttttacgaaatttattt
ggcacgcagctctatcagcgactaaacgaatggttgcacgcccaacaaaagaatgtagaa
aaagagctaactagacaaacggatcagttagaaaacttacggcaacagtttcaaggtgaa
tttgagtctccagcttcctaccaagaaactttgctgaaatggcaagatgccttagaacaa
ttagagcgtgaaattgttgaagaaaaaagacaacttgaaaaacaaaaagaaatgaaaaaa
gaagcggaaaaagctttttataaaggtaaggaaattaccaatgcattggatgagtatgat
aaattaatccaaaagcaagaaactttaaaagcaaaagaatctaaaatggaagaaacaaag
caatattttgcccaactttcttggataaatgaaaaaaaagatttgctcagacaagaagat
gattatggtaaagaaatcgaagaaatcaatcattccttaaaagatataaaacagcagtta
aagaaaaaccaaagtgaacaagaggctttaagaaaacaaaaagaagactatgagaaatgg
caaacacaacaagaagataagcagtacgctttaaaacgtattaatgatgagttgcccact
gttcaaaagatcaatcagctggcaaaacaaagtgagcagctttacgcaagtatgacacaa
agacaaaatgaaatagatactttaaaaaaacagttagaaaaaaaccagtcactaaaagag
gatttaagtcaaaaaactcagcaaaaaccagctttacaagaagaaaagttacaattatat
cgttacgatgaacttgtaagacattttgtagaagcacaagcagaaaaagacagtcaaaaa
actgcttataaaaagacacaagaagaaatagagcgattaaagcaacagttagaagtttac
caacaggcagaaaaaaatagtaaagaccaactaacaacagcacgtagtgaaaatgccaag
atgcagattgctcgtttacagttattgttaaaagaggaagagccgtgtcctgtctgtggt
tcattacaccatgattctgtttatgctaagcaacatagctatacattggcagaaattaca
caaaatgaagagaacttagcccaaagtgaagaaacgtatgctcaaacattggaagaaaaa
caaaaaacttcggcagctctagaaagtcgtagaaaagaacaagaacaaatcagcgtgaaa
ctgacaaaagcgcaagaaaatctgcaagaactgacagaagaatgtgaagctactttagag
atttccattgaaaaaactgagccaaaagcttatttacaaaaatggcaagataaactaaat
aaagagataaaagaaatcgaagaagctgagaaaaagcagaatttattaatagaagaagct
gaaaagacaagtgctaaattgtcacaattgcaagaacagtattcaaacgataaagaggaa
gtaacaaaactttcagcagagcaggataccctaaaggggcagctaagttatcaaaatact
gaagatctggaaaaacaaaaaagtcaattagaagaagagataacaaccatccagaaaaag
atagatcagtataagcaagaagaagaaaaaatacaaacggatctaacaaccttaaatgaa
cgaaacagtcaatatcagcaacaagttcgtcggtcacaagaaaaaagaaatgggatcaaa
caaaagcttgatcaagcgattcaaaagagttcttttgtttcatcagaagaagagatgcgt
caactattgccagaattaaagcaattagaatctctgcgcgagatcattgaacaagatcaa
aatgaacgagaatatacaaaaaaacgcctgcatgaacttaaggattttaaagaaaaggtt
cgcccggacttaaaaaatttagagaaaaaaaggcaagatgctgaagaaaaagaagcatcg
gtccaaacctcattgatccaaaaacaagaagtattgcgttcgaatcaaaaaataatggcg
gattttcaacagttatatgcaacaaatcaaaatgaaatggaaaacatgagccaaattaaa
cagttggcagaaacgatgaatggtgataacctagaaagactggggatcgaacgctatgtt
ttacagtctttttttgcagaagtcttggaagtagccaacgtgcgtttaaataaattaaca
caagggcgttatcagttcttgctttctaatgaaaagggcagttataaaaaatccacaggc
ttagaaattagtatctatgatgatcatgctggaacgagccggcgagcacataccttatct
ggtggtgaaagttttattgccgctttggcactagctttatcgctaggcgatgtgattcaa
agtcatgctggtggtgttttgattgagacgttatttatagatgagggctttggctccttg
gatgaagaggcgctggaaatggcgattgaagctttagaaatggtagaagatgaaggaagg
atgattggcattatcagtcatgtacaagagcttaaaaatcgtatcacacaacaaatgatc
gtaaaaacagatggtagtggacaaagttatattactaaccgtatagttgactaa
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