Tetragenococcus halophilus NBRC 12172: TEH_12920
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Entry
TEH_12920 CDS
T01640
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
thl
Tetragenococcus halophilus NBRC 12172
Brite
KEGG Orthology (KO) [BR:
thl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thl03016
]
TEH_12920 (truB)
Enzymes [BR:
thl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
TEH_12920 (truB)
Transfer RNA biogenesis [BR:
thl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
TEH_12920 (truB)
Prokaryotic type
TEH_12920 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Glyco_hydro_120_ins
Motif
Other DBs
NCBI-GeneID:
11261354
NCBI-ProteinID:
BAK94619
UniProt:
A0AAN1SHJ9
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All DBs
Position
1286176..1287093
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AA seq
305 aa
AA seq
DB search
MDGILPLWKDRGMTSHDCVSKLRKILHTKKIGHSGTLDPDVDGVLPICIGKGTKVVEFLV
DSGKEYEGEITLGYATTTEDASGEVVQQDPINEPFSVKEIDDAMQKFVGEMTQVPPLYSA
VKVNGKRLYEYARSGQSVERPQRKVQIESFTRTSRPVHQEKQQTQSWRFKVVCGKGVYVR
TLAVDLGKELGVSAHMSDLTRVKSAGFTKGQAITLEKVQAAAEKDQVSEILLPIEYGVQA
FQRVDISEQLWQKVRNGARLPYSAFGLVDMPKEAVAIFYQNQVVSLYEANKNEKNGLKPL
KVLKN
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggacggtattttacctttatggaaagatcgtggcatgacaagtcatgattgcgtgtct
aaattaagaaaaatcttacatactaaaaaaatcgggcatagcgggacactagatcctgat
gtcgatggcgtactacctatttgtattggaaaaggaactaaagtagtcgaatttttagtc
gattctggaaaagagtatgaaggcgaaattacactcggttatgcaacaactactgaagat
gctagtggagaagttgttcaacaagatccgattaatgagcctttttcagttaaggaaatt
gatgatgcgatgcaaaaatttgtcggagagatgactcaagttcctcctttatattctgct
gtgaaagtaaatggtaagcgtctttatgagtatgcaagaagtggacaatcagtagaaaga
ccacagcgtaaagtacaaattgaatcctttacgcgtacgagtaggccagttcaccaagaa
aaacaacagacacaatcttggcgcttcaaagtagtttgtggtaaaggcgtttatgttaga
actttagctgttgatcttggtaaagaactcggcgtgagtgcgcatatgtcagatttaacg
cgcgttaaaagcgctggttttacaaaaggacaagcgataactttagaaaaagtacaagca
gcagcagaaaaagatcaagtgagtgaaatattactgccgatagagtatggcgttcaagct
tttcaaagagtagatatttctgagcaactgtggcagaaggtcagaaatggggcacgctta
ccttattcggcttttggtttagttgatatgccaaaagaagccgttgcgattttctaccaa
aatcaggttgttagtttgtatgaagccaataaaaacgaaaagaacggcttaaagccctta
aaagtattaaagaactga
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