Tetragenococcus halophilus NBRC 12172: TEH_13170
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Entry
TEH_13170 CDS
T01640
Symbol
addA
Name
(GenBank) ATP-dependent nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
thl
Tetragenococcus halophilus NBRC 12172
Brite
KEGG Orthology (KO) [BR:
thl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thl03400
]
TEH_13170 (addA)
Enzymes [BR:
thl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TEH_13170 (addA)
DNA repair and recombination proteins [BR:
thl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
TEH_13170 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
RNR_N
AAA_30
HSF_DNA-bind
AAA_12
NACHT
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
11260803
NCBI-ProteinID:
BAK94644
LinkDB
All DBs
Position
1318452..1322129
Genome browser
AA seq
1225 aa
AA seq
DB search
MTDIPLKPKNETFTDKQWQAVFDTGDNLLISASAGSGKTTVLVRRVIEKLKSGSNIDELL
IVTFTEAAAREMKERIQSSLQDAINKESQQSRRNHFVKQLSLLPRAHISTLHAFCLTVIR
RFYFLIDLDPVFRMLTDDTERILLKEEVWEELRDEYFEASDQEFYQLAENFSSDRSDDGF
TDLIMSLYNFARANPDSTTWLNQLVQSYDTTHGLAGNQMYQTQVKPLVLANLQTAIGQLQ
AALQVAQSSESMEKAVVVVANDLEQANRLYAYIKEDNVEQVYAQLTSFDFKRYPTYKKEE
EKELSKQFIKPRRDHAKELIKDSETFFAQPPEKMLELMEQAKPLVKKMSEVTLSFIDRYQ
KRKQAKGVLDFNDLEHYALDILQANGEGSEASSYYRDRFEEVLVDEYQDTNRLQEAILFW
IRKPDPAQGNLFMVGDVKQSIYAFRLADPTLFVDKYLAFAQQNGGRRIILAENFRSRKEV
LHFTNLVFEQLMDEKVGQIPYDEAAQLVPGFSDFPESDAFNTELLLYEKEVEEDPTVVDD
KTEGELYLVALKIKELVENKFMIYDKHAKEKRAVTYNDIVLLTPTRKNNLVIMDIFKQFQ
IPLEVNDAQNYFQASEIQIMISLLEIIDNPYQDIPFVAVLRSPIVGLNEEELTKIRLAKK
NDDYYKAFLAYLSEDDELASRLRTFNEQLELWRTLARRRSLSELIWSIYQETAYLDYVIG
LPSGRQRHANLVALAHRAETYEKSSFRGLYQFIRFIEKMQEKDKDLAEPLALTQENAVKV
MTIHASKGLEFPVVFLLDMTKQFNYSDFSTRYIFEERLGAGIQYIDQAQVRYDTLPYQAI
KQQRIQKMLSEEMRKLYVALTRAEQKLYLVGSYKTKEEALKNWQQALDQENLVLDTALRL
KGKGNLMDWVGMTLMRHPDMQKVFAEAKDSKKVLDHPAHFEIHWVNQAQLQKELNKPKTS
VAEDFSLSNSEKTEVNDLQQRLDFVYPLEKSTKTTSYQSVSEMKRLYNDPDDQQLNRISW
QSNVEQQQAQYYRYVTEELAKPKFMQADRIDPTTVGSATHSLLQLIPLTTLPTFDSIQEK
LKQLVDNHQIEKQVAEKIDLTAILWFFQTELGKEILKKPQLVHREQPFSMLKDARDVFLD
FHEADAELLIHGIVDGFIEYEDYVILYDFKTDAVYNETSRQQFIAKYQGQLRLYCQALEQ
ALNKPVQHTFLVLLNSKENIELFTE
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcctttaaaaccaaaaaatgaaacatttactgacaaacaatggcaagca
gtatttgacactggtgataatttactaatatctgcttcagcaggttcaggaaaaacgact
gttttggtacgtcgcgtgattgaaaaattaaagagtggaagtaatattgacgaattattg
attgtcacctttaccgaagcagcagctagagaaatgaaggagcgtattcaaagttcttta
caagatgcaattaataaagaaagtcagcaatcgcggcgtaatcactttgttaaacagcta
tctttactacctcgagctcatatttctactttgcatgctttttgtctaactgttattcgc
cgtttttactttttgattgacttggatccagtatttcgtatgcttactgatgatacggag
cggatattattaaaagaagaggtttgggaagagttacgggatgaatactttgaagcttct
gatcaggaattttatcaattagcagagaatttttctagtgatcgctcagatgatggattt
actgatctgatcatgtctttatataattttgctagagccaatcctgattcgaccacttgg
ttaaaccagctggtacaaagttatgatacgacacatggtttagcaggaaatcagatgtat
caaacccaagttaagccgcttgttttagctaatttacaaacggctattggtcaattacaa
gcagctttgcaagtagctcaaagttcggaatcgatggaaaaagcagtcgttgtagtcgcc
aatgatttagaacaagcgaatcgtttatatgcttacatcaaggaggataatgtagaacaa
gtttacgcgcagttaacaagctttgactttaaacgctatccaacttataaaaaagaagaa
gaaaaggaactatcaaaacaattcattaaacctcgacgtgatcatgctaaggaactcatt
aaagattctgaaacattttttgcgcagcctcctgaaaaaatgctcgaattaatggagcaa
gccaaacctttagttaaaaagatgagcgaagtaactttaagctttattgatagatatcaa
aagcgtaagcaggctaagggtgtattagattttaatgatcttgaacattatgccttagat
attttacaagctaatggcgaaggtagtgaagcttcttcttactatagagatcgttttgaa
gaagttctagttgatgagtaccaagataccaatcgcctgcaagaagctattttgttttgg
atccgtaaaccagatcccgcacaaggaaacttattcatggtaggagatgtgaagcaatct
atttatgcctttcgcttggctgatccgacattatttgtagataaatacttagcttttgca
cagcaaaatggtggccgaagaattattttagcggaaaactttcgttctagaaaggaagta
ctacactttaccaatctggtatttgagcaattgatggatgaaaaggtaggtcagatccct
tatgatgaagcagctcaattagtccctggtttttcagattttcccgaaagtgatgcattt
aatactgagttactcttatatgaaaaagaagttgaggaagatccaacagtcgttgacgat
aaaactgaaggagaattatatctggttgcgctaaagatcaaagaactagttgaaaataag
tttatgatctatgataaacatgctaaagaaaaacgggctgttacttacaatgatattgtg
ttattgacgccaacacgcaaaaataatctagtgattatggacatatttaaacagtttcaa
attcctttggaagtcaatgatgcacaaaactactttcaagcatcagaaatccaaattatg
atttcactattagaaattatcgataatccttatcaggatattccttttgtagcagttctg
cgctctccgatagttggtttaaatgaagaagagctaactaaaattcgtttagctaaaaaa
aatgatgattattataaggcatttttggcgtatttgtcagaagacgacgaacttgctagt
cgtctgcgaacttttaatgaacaattagaattgtggcgaacactagctagaagacgttca
cttagtgaattgatctggtcgatttatcaagaaacggcctatttagattacgtcattggc
cttccttcaggtcgacaacgtcatgccaacttagttgctttagctcatcgggcagaaact
tatgaaaagagtagttttagaggtttgtatcagtttatccgttttatcgaaaaaatgcag
gaaaaagataaggacttagccgaacctcttgccttaactcaagaaaatgcggtaaaggtt
atgacgatccatgctagtaaaggactcgaatttccggtggtttttcttttggatatgact
aagcagtttaattatagtgatttttcgacacgctatatttttgaagaacgtttaggagca
ggtattcaatatatagatcaagcacaagttcgctatgatactttgccgtatcaagcaatc
aaacagcaaagaatccaaaaaatgttatcagaggaaatgcgtaagttgtatgttgccttg
acccgagcagaacagaagctttatctagttggctcctacaaaaccaaagaagaagcctta
aagaattggcaacaagcgctagatcaagaaaatttggtgctagatacagctttacgtcta
aaaggcaaagggaacttaatggattgggtaggaatgactttgatgcgtcatccagatatg
caaaaagtttttgctgaagccaaagatagtaaaaaagtacttgatcatccagctcatttt
gaaatacattgggtaaatcaagcacaactacaaaaagagttgaataagcctaaaacatca
gttgctgaagatttttcattaagtaattcagaaaaaactgaagtaaatgacttacagcaa
cgtttggactttgtttatccattagaaaaatcaaccaaaaccactagttatcagtccgtt
tctgaaatgaaacgtttgtataacgaccctgatgaccagcaacttaatagaatctcttgg
caaagtaatgtcgagcagcaacaagcacaatattatcggtatgtaacagaagaattggct
aaacctaaatttatgcaagcagatcgtattgatccaacgactgtaggcagtgcgactcat
agtttattacagttgatcccattaacgactttgccaacatttgacagtatacaagaaaaa
ttaaaacagttagtagataatcatcaaatcgaaaaacaagttgctgaaaaaattgattta
acagctattctgtggtttttccaaacagaattaggcaaagaaattttaaaaaaaccacaa
cttgtccatcgtgaacaaccattttctatgctaaaagatgctcgtgatgtatttttagac
tttcatgaagcagatgctgaattattaatacacggtattgtcgacggttttatcgaatat
gaggattatgttattttatatgactttaaaacagatgctgtgtataatgagacaagcaga
caacagttcattgctaagtatcaagggcaattacgcttatattgccaagctttggaacag
gcactaaataaacctgtgcaacatacttttttagttcttttaaatagtaaagaaaatatt
gagttatttaccgagtaa
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