Tetragenococcus halophilus NBRC 12172: TEH_13400
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Entry
TEH_13400 CDS
T01640
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
thl
Tetragenococcus halophilus NBRC 12172
Pathway
thl03410
Base excision repair
thl03430
Mismatch repair
thl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TEH_13400 (recJ)
03430 Mismatch repair
TEH_13400 (recJ)
03440 Homologous recombination
TEH_13400 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thl03400
]
TEH_13400 (recJ)
DNA repair and recombination proteins [BR:
thl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TEH_13400 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TEH_13400 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TEH_13400 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
BsuPI
Motif
Other DBs
NCBI-GeneID:
11259884
NCBI-ProteinID:
BAK94667
UniProt:
A0AAN1VR41
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Position
1343241..1345538
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AA seq
765 aa
AA seq
DB search
MKPANYNWQLPSDVELPEEFIDQLKKEKIPSFLGKLLWQRGIQSPQEIATFFHPSLDQLH
DPFQLFDMEEAVSRVQQALENEEKILIYGDYDADGITSTSLIKETLELLGADVDYYLPNR
FKDGYGPNIEVYKEKITEGVQLILTVDNGVSGHEAIDFANSQNVDVIVTDHHELPQSLPD
AYAIIHPRHPEGQYPFGELAGVGVAFKFACALLDEVPTDFLDLVAIGTVADMVSLTDENR
ALVVFGLEALKQTQRIGLLELLRVSQIRLEEVDESTIGFAIAPRLNALGRLQDPNEAVEL
LTTFDQEKAAYLSEQLNQVNTQRKAITQEITEEAMQQLSPDKKVQIIAGENWNEGVLGIV
AGNIAQKVGKPTIVLTQTQEGLLKGSGRSVDTVNLFKLLDQTRELMTSFGGHHAAVGLSI
QKENLSLLIKKVNEILDSNNIQPANQLSVDAVLSLSDVKLQHIEALQNLAPFGMDNPLPY
ILFKDCSAINTRTVGADGKHLKLSLKDSSEENVEGIGFGFGPDMLEFQSEFIDIVAQLSI
NEWNHKRIPQIILKDYRINHMQVFDYRSKKHQQNLTFVEPTLFVSFSEKESKKIEERIEH
PVVTYKDSQDFLAAIEKTTFNQLVLFNCPIQLEEAKAAIKAAQVSRVFFLCSAKDDAYLD
GVGTREQYAKLFHFISKQQQVDVRYKLPVIAQYLAIPEKLLFFMIQVFFDLGFVTITDGI
MNQVQDPKPQALTESQAYQKRLNKIKTEEFLLLSDLPSLKSWLAT
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccagcaaattataattggcaacttccatcagatgtagaattgccagaagaattt
attgatcaattaaaaaaagaaaagatacctagctttttgggaaaacttctgtggcaacgt
gggattcaaagtccgcaggaaatagcaactttttttcatccgtcgcttgatcaattacat
gacccatttcaactatttgatatggaagaggccgtttcacgggtgcaacaagcactggaa
aatgaagaaaaaattttgatttatggtgactacgatgctgatggtattacgagtacatca
ctgataaaagaaacattggagcttttaggtgccgatgttgattattatttacccaatcgc
tttaaagatggatatggtcctaatatagaggtatataaagaaaaaataactgaaggtgtt
caactgatacttacagttgataacggcgtttctggccatgaagcaattgattttgctaac
agtcagaatgtagatgtaatcgttacggatcaccacgaattaccccagtcattgcctgat
gcttatgctattattcatccgcgtcatccagaaggacaatacccttttggtgaactagcc
ggcgttggtgttgcttttaagtttgcttgtgcgttacttgatgaagtacccacagacttt
ttagatttagtagccatcggtaccgtcgctgatatggtttcacttactgatgaaaatcgc
gcgctcgttgtttttggactagaggctttaaaacaaacacagcgaatcggtttacttgaa
ttgttacgggtgagtcaaatccgtttagaagaagtagacgagtcaaccattggttttgcg
atcgcgcccagattaaacgctttaggacgtttgcaagatcctaatgaagcggtagagtta
ttaactacttttgatcaagagaaagctgcctacttatctgaacaattgaatcaagtgaat
acacaaagaaaagcaattacccaagaaataactgaagaagccatgcaacaattatctccg
gataaaaaagttcaaatcattgcaggtgaaaattggaatgaaggcgtactagggattgta
gcaggaaatattgcacaaaaagtaggaaaacctacgattgttttgactcagacgcaagaa
ggactcttaaagggttcaggacgcagtgttgatacagttaatttattcaagcttttagac
caaactcgcgaattaatgaccagttttggcggacaccatgccgctgttggacttagtata
caaaaagagaatttgtctttactaataaaaaaagtgaatgaaatacttgattcaaataat
attcagccggctaatcaactttcagttgatgcagtacttagcttgtcagatgttaaatta
caacatattgaagcgctgcaaaatttagcgccttttggtatggataatcctttgccgtat
attttgtttaaagattgttccgcgataaatacccggactgttggagcggatggcaaacat
ctgaaactgtccttaaaagattcttctgaagaaaatgtggaaggcatcggctttggtttt
ggtcctgatatgttagaatttcaaagtgaatttattgatattgtagcgcaactgtcgatt
aatgagtggaatcataaacgtattcctcaaattattttaaaggattatcgtatcaatcac
atgcaagtatttgactatcgttcaaaaaagcatcaacaaaatctaacatttgtagagcca
acattgtttgttagtttttctgaaaaagaaagcaaaaagattgaggaaagaattgaacat
ccggtagtcacttataaagattcacaggattttcttgctgcaatagaaaagactactttt
aatcagttggtactttttaactgtccaatacaattagaagaggctaaagcagctattaaa
gcagctcaagtctcacgtgtatttttcttgtgttcagctaaagatgatgcttatctagat
ggcgtaggcacgcgagaacagtatgctaagttatttcactttatctccaaacaacagcaa
gtggatgtgagatacaagttacccgttattgcacaatatttagctattccagaaaaatta
ttgttttttatgattcaagtgttttttgacttaggatttgttacaataacagacgggatt
atgaatcaagtacaagatccaaaacctcaagcattgaccgaaagccaagcttatcaaaaa
cggttgaacaaaatcaaaacagaagagtttttattgctaagtgatttaccctctttgaaa
agttggttagcaacataa
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