Tetragenococcus halophilus NBRC 12172: TEH_24560
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Entry
TEH_24560 CDS
T01640
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thl
Tetragenococcus halophilus NBRC 12172
Pathway
thl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TEH_24560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thl03400
]
TEH_24560 (mfd)
Enzymes [BR:
thl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TEH_24560 (mfd)
DNA repair and recombination proteins [BR:
thl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TEH_24560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
AAA_22
T1R_D3-like
Motif
Other DBs
NCBI-GeneID:
11260645
NCBI-ProteinID:
BAK95783
UniProt:
A0AAN1SIQ2
LinkDB
All DBs
Position
complement(2457200..2460733)
Genome browser
AA seq
1177 aa
AA seq
DB search
MDLIELVTQMPLVKDWHQAIKEHRQRQLLTGLANSAKTLAIASAYRKFKQQIIVASPNLY
YANQLAEDLMQVTEDVYIFPVDEVLSAEMAFSSPETRAQRVTTLNALAANKTGIYILPAA
ALRKYLPTPELWESYRFHWQIGSEINWQQLAQQLVLMGYQRESMIAKPGEFSIRGSILDI
YPLTTPHPVRIELFDVEIDSIRYFDVATQRSLENLEEVTILPTTELIFSKKDLENGSIQL
QELLDKRLSVTTEQTNIDFLNDYFGQLIASWKQGVPGEAPGMYADILYPEQTNILSYFQN
DALLFVDDYARILETNRQIEQEEAEWQTQKIEELRVFPEQTFGQKLQPIFQQTKFAATFF
SLFQKGMGNIRFEAIHNFQYRPMQQFFGQMGLLKAEMDRWEKQNQTVVFLVSDEQRAQKL
AQDFRDYEIYAVETQPDELLLQGTQIVQGSLQSGFELPQDQLVVVTEKEIFQKVKKKRAK
KQTLSNAERLKSYNELNPGDYVVHANHGIGKYLGIETLEVDGIHQDYMTILYQNDDKLFI
PVSQLNLIQKYVASENASPKINKLGGSSWEKTKQKVSNQIEDIADDLIQLYAQREAEKGY
AFAPDDAYQKEFEDAFAYTETDDQLRSAEEIKRDMEKEKSMDRLLVGDVGFGKTEVALRA
AFKAIKESKQVAILVPTTILAQQHYETMIDRFAGLPVNVGLLSRFRTKKQQDETIRQLNT
GQVDIVVGTHRLLSKDVQFSDLGLLVIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPENRYPIQTYVMEANPGAIREAIQREIARGGQVFYLYNRVES
IERKVDEIQQLVPDARIGYAHGQMTEIQLENTLFDFINGQYDVLITTTIIETGVDIPNVN
TLFVENADYMGLSTLYQLRGRVGRTNRVAYAYFMYEPQKILNEVSEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGAQQHGFINSVGFDMYTQMLEEAVTRKQGKNTQMQKTAAEID
LAIDAYIPADYIADERQKIEIYKRVRELDSTDSLDELQDDLLDRFGEFPDEVAHLLSIGE
MKMNADRALVEKITKVDQTLVVSLSKIGTNKFSVEQLFSALSSTKLKATMGVEKEQMQIK
LTIPAQTQEMVWIQELQSFIKALREEGYQTQLQSQNQ
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggatttaattgaattagtcactcaaatgccgctcgttaaagattggcatcaagcaatc
aaagaacatcgtcagcgacaattgctcaccggactagcaaattcggcgaaaacattagct
attgctagtgcttatcgtaaatttaagcaacaaatcatcgtcgcttcacctaacctttac
tatgctaaccaactagcagaagatttgatgcaagtaacagaagacgtatatatatttccg
gtagatgaagttctttcagctgaaatggcattttcatcaccagagacaagggcacagcga
gtgacgacactaaatgcacttgcggcgaataaaacaggtatttacatattacctgcagct
gccttgcgtaaatatctgcctacacccgagttatgggaaagctatcgttttcattggcaa
attggctcagaaattaattggcaacaactagcgcaacaacttgttttgatgggctatcaa
cgagaatcgatgatcgcaaaaccaggtgaatttagtattcgtggtagtattttagatatt
tatcctctgactacacctcatccggtaagaattgaactgtttgatgtggaaattgattca
attcgttattttgacgtggcaacgcaacgttccttagaaaatctagaagaagttacgatt
ttaccgacgactgaacttattttttcaaaaaaagatttggaaaatgggagtatacaatta
caggaattattggataagcgtttgtctgtgactacagaacaaaccaatatagacttttta
aatgattactttggacaattgattgcttcttggaaacaaggtgttcctggagaagcccct
gggatgtatgcggatattttgtatccagaacaaacaaatatactatcctatttccaaaat
gatgcgcttctttttgttgatgattacgctcgtattttagaaacgaatcgtcagattgaa
caagaagaggcagagtggcaaacacaaaaaatagaggaattacgtgtattccctgaacag
acttttggacaaaagctgcaacctatttttcaacaaacgaagtttgctgcgacatttttc
tctttatttcaaaagggaatgggaaatatccggtttgaagcaattcataactttcaatat
cgaccaatgcaacaattttttggtcaaatgggtcttcttaaagcagaaatggatcgttgg
gaaaaacaaaatcaaacggttgtgtttttggtcagcgatgaacaacgtgcgcaaaaatta
gcgcaagattttcgcgactacgaaatttacgcagtggaaacacagccagatgagttgctt
ttacaaggtacgcaaatcgtacaagggagtttgcagagcggttttgaattgccgcaagac
cagcttgtagtagtaacggaaaaagagatcttccaaaaagtaaagaaaaaacgagctaaa
aagcaaaccttgtccaatgctgaacgcttgaaaagttacaatgagttaaatcctggtgat
tatgttgttcacgcaaatcacgggattggtaaatatttgggtattgaaaccttagaagtt
gatggtatacatcaagactacatgacgattttataccaaaatgatgacaagctgtttatt
cctgtgtcacagttaaacttaatacaaaaatatgttgcttcagaaaatgcgtcgcctaaa
attaataaattaggtggaagctcttgggaaaaaacgaagcaaaaagtttcgaaccaaatt
gaagatattgctgacgatttgattcaattatatgcacaaagagaagctgaaaaaggctac
gcttttgcccccgatgatgcctaccagaaagagtttgaagatgcttttgcttatacagag
actgatgaccaattgcgtagtgccgaagaaattaagcgtgatatggaaaaagaaaaatca
atggatcgcctgttagtgggcgatgttggttttggtaagacagaagttgcattgcgggcg
gcatttaaagccattaaggaaagtaagcaagttgctattttagttccaacgactatattg
gctcaacagcactatgagactatgatcgatcgttttgcaggtcttccagtaaatgtagga
ttattaagtcgcttccgtactaaaaaacagcaagacgaaacaattagacaattaaatacg
ggacaagttgatattgttgtagggacacaccgtcttttatctaaggatgttcagtttagt
gatctaggtttattagtgattgatgaagaacagcgctttggcgtgaagcataaagaacgg
ttgaaacaactaagagcacaagttgatgtgctaactttgacagcaacaccgatccctagg
acgttgcatatgtcgatgttaggtgtacgagatttatcggtaattgaaacacctccagaa
aaccgttatcctatccaaacttatgttatggaagccaatccaggagctatcagagaagct
atccagagagaaatcgctcggggtggccaggtcttttatttgtataatcgagttgaaagt
attgaaagaaaagttgatgaaattcaacaattagtacctgacgctagaattggttatgct
catggtcaaatgacagaaattcaactggaaaatacgctgtttgattttatcaatggacaa
tatgatgtgttaatcactactacgattattgaaacaggggtagatattcctaatgtcaat
acattatttgttgaaaacgcggactatatggggctttccacgctttatcaattaagagga
cgcgtaggacgaacgaaccgagtggcttatgcctatttcatgtatgaaccacaaaagata
ttaaatgaggtaagtgaaaaacggctacaggcgatcaaagactttactgaattaggttca
ggttttaaaattgctatgcgtgatttatccattcgcggcgctggaaatcttttaggtgct
cagcaacatggcttcatcaactctgttggttttgatatgtatacacagatgttagaagaa
gctgtgacaagaaaacaagggaaaaatacccaaatgcaaaaaacagcagctgaaatcgat
cttgcaattgatgcttatattcctgctgattatattgctgatgaaagacaaaaaatcgaa
atttataaacgtgtacgtgaattggacagtacagatagtcttgatgaattacaagatgat
ttattagatcgttttggagaatttcctgatgaagtcgctcatttattatcaataggcgaa
atgaagatgaacgctgatcgtgctttagttgagaaaataactaaagtcgatcaaactttg
gtagttagtttaagtaaaattggtacgaataagttttctgtagaacaattattttctgca
ctttcttcgactaaactgaaagctacaatgggtgttgaaaaagaacaaatgcaaattaaa
ctgactatacctgcacaaacacaagaaatggtttggatacaagaattacagtcatttatt
aaagctttacgtgaagaaggataccagactcaattacaaagccaaaaccaataa
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