Thermococcus cleftensis: CL1_0309
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Entry
CL1_0309 CDS
T02169
Name
(GenBank) hypothetical protein containing nucleic acid -binding domain
KO
K07573
exosome complex component CSL4
Organism
thm
Thermococcus cleftensis
Pathway
thm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL1_0309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thm03019
]
CL1_0309
Messenger RNA biogenesis [BR:
thm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CL1_0309
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CL1_0309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
OB_RRP5_4th
Auto_anti-p27
Zn_ribbon_PaaD
PCB_OB
S1_RRP4
S1_RRP5
Zn_ribbon_IS1595
DZR_2
Zn_ribbon_3
A2L_zn_ribbon
DZR
HypA
Trm112p
Motif
Other DBs
NCBI-ProteinID:
AFL94520
UniProt:
I3ZS36
LinkDB
All DBs
Position
277934..278524
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AA seq
196 aa
AA seq
DB search
MDEKKGVKSGDLVLPGDYLGVIEEYFPGEGVKEENGELYAVRAGKVVIDQDRMEISIEPV
TDTPPLPKVGDIVIANVIEVKPQAAIVQLVKIEGRDDDREIATSKLAGIHISQVRDGYVE
SMTSEFKVGDVVRARVIATEKSPIQLSTKGPDLGVVYALCSRCRTPLVRRGDRLICPRCG
SVETRKLSTLYRKMRV
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaagaaaggagtcaagagcggtgacctagttcttcccggtgactacctgggc
gtgatagaggagtacttcccaggtgagggggttaaagaggagaacggcgagctctacgcc
gtccgggcggggaaggttgtaatcgaccaggacagaatggaaataagcatagagcccgtt
actgacacaccccctctccccaaggtgggcgacatcgtcatagcgaacgtcatcgaggta
aagccccaggcggcgatagtccagctggttaaaatcgagggcagggacgacgacagggag
atagccacttcaaaactggctggaattcacatctctcaagttagggacggctacgttgag
agcatgacctccgagttcaaggtgggagacgtcgttagggcgagggtcatcgccaccgag
aagagccccatacagctctcgaccaaggggccggacctcggtgttgtttacgccctctgc
tcccgctgcagaactccactcgtcaggcgcggtgacaggctgatctgcccgaggtgtgga
agcgtcgagacgagaaagctctccactctctaccggaagatgagggtgtga
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