Thermococcus cleftensis: CL1_0667
Help
Entry
CL1_0667 CDS
T02169
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
thm
Thermococcus cleftensis
Pathway
thm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL1_0667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thm03019
]
CL1_0667
Messenger RNA biogenesis [BR:
thm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CL1_0667
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CL1_0667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AFL94872
UniProt:
I3ZT38
LinkDB
All DBs
Position
complement(607888..608697)
Genome browser
AA seq
269 aa
AA seq
DB search
MEIMAGIMRDHILALLKEGKRVDGRGLEDYRDLEIRVNVIEKAEGSAWVKLGNTQVLVGI
KVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESGAVELE
KLVIVPGKLVRVVFIDVHVLDHDGNLLDATGIGAIAALLSTKIPKVVYNEETDEVEVLDE
YEPLPVRRVPIPVTFAKIGPSLLIDPNLDEERVMDGRIIITTDENGMISSVQKSEGGSFK
LEEVIYAVDTAIKKGAEIREKVLEAVKAE
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggagataatggccggcataatgcgcgaccacatcctggcgctcctcaaggagggcaag
cgcgtggacggccgcgggctcgaggactatcgcgaccttgagatcagggtgaacgtcatc
gagaaggcggaaggctcggcctgggtcaagctcggcaacacccaggttctcgtcggcata
aaggtggacatgggtgaacccttccccgacctcccggacaggggagttataaccaccaac
gtcgagctcgtccccctcgcttccccgagcttcgagccaggaccgccggacgagaacgcc
atcgagttggctagggttgtggacagggggatcagggagagcggggcggtcgagctggag
aagcttgtcatcgttccgggcaagctcgtgagggttgtcttcatcgacgtccacgtcctc
gaccacgacggcaacctgctcgacgccaccggaattggtgccatagccgccttgctcagc
accaagattccgaaggtcgtctacaacgaggagaccgacgaggtggaggttctcgacgag
tacgagcccctgcccgtcagaagggtccccataccggttaccttcgccaagataggtccc
agcctgctgatcgatccaaacctcgacgaggagcgcgtcatggacggcaggataatcata
accaccgacgagaacggaatgatatcctccgtccagaaaagcgagggtggtagcttcaag
cttgaggaggtcatctacgcagtggataccgccatcaagaagggggcagagataagggag
aaggttcttgaggccgttaaggccgagtga
DBGET
integrated database retrieval system
