KEGG   Thermococcus cleftensis: CL1_1313
Entry
CL1_1313          CDS       T02169                                 
Name
(GenBank) replication factor C small subunit
  KO
K04801  replication factor C small subunit
Organism
thm  Thermococcus cleftensis
Pathway
thm03030  DNA replication
Brite
KEGG Orthology (KO) [BR:thm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CL1_1313
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thm03032]
    CL1_1313
DNA replication proteins [BR:thm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (archaeal)
    RFC (replication factor C)
     CL1_1313
SSDB
Motif
Pfam: LAGLIDADG_3 Intein_splicing Rep_fac_C HTH_3 AAA MarR_2 RuvB_N RCF1-5-like_lid HTH_26 DNA_pol3_delta2 TrmB AAA_assoc_2 HTH_19 HTH_24 LAGLIDADG_WhiA PT-HINT Mg_chelatase HTH_IclR Rad17 HTH_Crp_2 HTH_32 LexA_DNA_bind HTH_46 GntR DUF6293_C MarR wHTH-PRTase_assc Sigma70_r4 HTH_27 DprA_WH HTH_34 HTH_36 HTH_33 Hint
Other DBs
NCBI-ProteinID: AFL95511
UniProt: I3ZUX7
LinkDB
Position
1266305..1270726
AA seq 1473 aa
MSAEIQEVKILEKPWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGVGKC
LTGDAKVIANGELTTIGELVERIGNGRFGPTPVKGLKVLGIDEDGRLRELPVEYVYKDKT
NELVRIRTGLGRELKVTPYHPLLVNRKNGRIEWVKAEELEPGDRLAVPRFLPAVLEEDPL
AEWLGYFIGDGHADAQSNVITFTNTDAKLRKRFMELTERLFPDAKIRERLHRNRAPDVYV
NSKMAKELVKGLDLAGRKADRVYIPPRGWRGLRSFLRAYFDCDAGVERGGIVLSTASREM
VEQISYALAGLGITAKVKERRVKKRPYYYVVISGSNNVSRFLAEVGFSIEEKRRKAEALI
RNPNPNVGSLYADRELISYVRDRLKLRFSDDKARWSPEKARKISWELMKEIYYRLDELEN
LEKALSRSILIDWNQVEERRKEIAEKTGIRADRILEYVRGKRKPSLRNYLKIAKALGIDL
EETVEAMRLFARKYSSYAEIGRLVGTWNSSVRIILEGNTEKIETLEEIRKAELELLRGIL
NDEKLKRGVAYLIFLAQNELVWDEIVEIERLRGDFVIYDLHVPGYHNFIGGNLPTVLHNT
TAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPVAGASFKIIFLDEAD
ALTQDAQQALRRTMEMFSNNVRFILSCVTGDTRIYTPDEREVRIRDFLGHFERGLLREVS
NRAGRDTVIAAVAFNSRIVGHPVFRLTLESGRTIEATGDHMFLTPEGWVQTYDLKEGSEV
LVRPTLEGTPYEEDPRPIIDLGDFYAFLEKIEREHGLKPIGEARTFRELLTREKEKILAR
ALELKAEMENGLTAREAEVLELIPGEWISREELQRKTGLSRVRINQLLKSLEEKGYVERR
ISGKAQLVRKVREGRPLRNPMDVKRALEEEFGIRISYTTVRKLLAGEVSGMAYDILREVR
EKWLVRYDDERAGILARVLGFLLGDGHLAKGVRVWFNSGREELEMLAEDLRKLGLSPSEI
IERESGSEINGRPVKGRIHMLYVDSSAFHALMRYWGVEAGNKTRRGYRVPEWIKKGNLFV
KREFLRGLFGADGTRPSGRRYNFNGIKLEMRATRESLELTTEFFNDLSELLREFDVESRV
TVSPVGDRFIVRLVVTPNDANYLRFLSRVGYAYAKDSHARLVGEYLRIKLAYKEIVLPEL
AEKAVELATSSNPTSAARLLGVKRDFVVSRLKGKEIGLTRDFMTFEEFLRERTLDGYVVE
KVIRKENLGYLDVYDVTCARDHSFISNGLISHNCNYSSKIIEPIQSRCAIFRFRPLSDED
IAKRIRYIAENEGLELTEDGLQAILYVAEGDLRRAINVLQAAAALDRKITDENVFLVASR
ARPEDVREMMQLALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLPIPEDRKVAL
ADKIGEYNFRLVEGANEMIQLEALLAQFTIMGK
NT seq 4422 nt   +upstreamnt  +downstreamnt
atgtcggcggagattcaggaggttaagatcctcgagaaaccctgggttgagaagtaccgg
ccccagaggctcgacgacatcgtcggtcaggagcacatagtcaagaggctcaaacactac
gctaaaaccggttccatgccgcaccttctcttcgcgggcccgcccggtgtcgggaagtgc
ctcacgggggacgcgaaggtcatcgccaacggcgagctgacgacgatcggggagctcgtt
gagaggatcggcaacggcaggttcgggccaaccccggttaagggccttaaggttcttggc
attgacgaggacggcaggcttagggaacttcccgtggagtacgtttacaaggataagacg
aacgagcttgtcaggataaggacggggctcgggagggagctcaaggtaacgccctaccac
cccctcctcgttaacagaaagaacggcagaatcgagtgggtgaaagcggaggagctggaa
cctggcgacaggctcgccgtcccgcgcttcctccccgcggttctcgaggaggacccgctc
gccgagtggctcggatacttcataggcgacggtcacgccgacgcgcagagcaacgtcata
accttcacgaacacggacgcaaagcttagaaagcgcttcatggagcttacggagaggctc
tttccagatgcaaaaatcagggagagactccacagaaaccgcgcgcccgacgtctacgtg
aactcgaagatggccaaggagctcgtcaaaggcctcgacctcgctggcagaaaggccgac
agagtttacatacccccccgggggtggaggggcctacgctccttcctgagggcctacttc
gactgcgacgccggcgttgagagggggggtatagtcctctccaccgccagcagggagatg
gtggagcagatttcttacgccctcgccgggctgggaatcacggccaaggtcaaggaaagg
cgcgtgaagaaacgtccctactactacgtcgtcatatccggctcgaacaacgtgtcgcgc
ttcctggctgaggttggattctcgattgaagagaagagaaggaaagcggaggcgctcata
aggaaccccaaccctaacgtcggttccctctacgctgacagggagctgatttcctacgtc
agggacaggctcaagctgaggttctcagatgacaaagcccgctggagccctgagaaagcc
aggaaaatatcctgggagctcatgaaggaaatctactaccgcctcgatgagcttgagaat
ctggagaaagccctgtcgaggagcattctgatagactggaaccaggtcgaggagaggaga
aaggagatagcggagaagaccgggataagggctgatagaatcctcgagtacgtgaggggc
aagaggaagccgagcctgaggaactacctgaaaatagcaaaggcactcggcattgacctt
gaggagacggtagaggcaatgcgcctctttgccaggaagtactccagctatgcggagatt
ggaaggctcgttgggacgtggaactcaagcgtcaggataatcctcgagggcaacacggag
aagatagagacccttgaagagatcaggaaggcggagctagaactcctcaggggcatactg
aatgatgagaagctcaagaggggagtggcctacctgatcttcctcgcccagaacgagctc
gtgtgggacgagatagttgagatcgagaggctcaggggagattttgtgatctacgacctg
cacgttcccggctaccacaacttcatcggtgggaacctcccgacggttctccacaacacg
accgccgctctggccctcgctcgcgagctcttcggcgagaactggaggcacaactttttg
gaactgaacgcaagcgatgaacgcgggataaacgttatccgagagaaggtgaaagaattt
gcaaggacgaagccggtcgcgggggcgagcttcaagataatcttcctcgacgaggcagac
gctttgacccaggatgcccagcaggccctgaggagaacgatggagatgttctccaacaac
gtccgctttatcttgagctgcgttaccggcgatacgaggatatacacccccgacgagagg
gaggtcaggataagggacttcctgggacacttcgagagggggctcctgagggaggtcagc
aaccgcgccgggagggacacggttattgccgcggttgccttcaactccaggattgtgggc
cacccggtcttcaggctgacccttgagagcggaaggacgatagaggcaaccggcgaccac
atgttcctcacccctgaaggctgggttcagacgtacgacctcaaggagggctcggaggtt
ctcgtcaggccaacgcttgagggaaccccctacgaggaggacccgaggccgataattgac
ctgggggacttttacgccttcctggagaagatcgagagggagcacgggctcaagcccatc
ggcgaggccagaaccttccgggagctgctgactcgggagaaggagaaaatcctcgcgagg
gcactggagctcaaggcggagatggagaacggcctcacggcgagggaggcggaggtactt
gagctgatacccggggagtggatttcgagggaggagctccagcggaagaccggcctctcc
cgcgtgaggatcaaccagctcctgaagtccctggaggagaagggctacgtcgagaggagg
atttcggggaaggcccagctcgtcaggaaggttcgtgaaggaaggcccctgaggaacccg
atggacgtgaagagggcccttgaggaggagttcgggataaggataagctacaccaccgtc
aggaagctcctggccggcgaggtcagcggaatggcctacgacatactccgcgaggtcagg
gagaagtggctcgtccgctacgacgacgagagggccggaatcctcgcgagggttcttgga
ttcctgctcggggacggccacctggccaagggagtaagggtgtggttcaactcgggcagg
gaagagcttgagatgctcgccgaagacctccggaagctcggcctttcgccctctgagata
atcgagcgcgaatccggctcggaaatcaacgggaggcctgttaagggcagaatccacatg
ctttacgtggacagctcggccttccatgccctcatgcgctactggggtgtcgaggccggc
aacaaaacgcgcaggggctaccgcgtgccggagtggataaagaagggcaacctattcgtc
aagagggagttcctgcgcggcctcttcggcgccgacgggacaaggccgagcggaaggcgc
tacaacttcaacgggataaagcttgagatgcgcgcgacccgcgagagccttgagctcacg
acggagttcttcaacgacctctccgagctgttgagggaattcgacgtcgagtccagagtc
acggtctcgcccgtgggcgacaggttcatagtccgcctcgtggttactcccaacgacgcc
aactacctccgcttcctcagcagggtcggctacgcctacgccaaggacagccacgcgagg
ctcgttggggagtacctcaggatcaagctcgcctacaaggagatcgtcctcccggagctg
gcagagaaggccgttgagctggcaacgtcgtccaacccgaccagcgccgccaggcttctg
ggcgtcaagagggacttcgtggtcagcaggctcaagggtaaagagattggcctgacgagg
gacttcatgacgttcgaggaattcctccgggagagaaccctcgacggctacgtggtcgag
aaggtaatccggaaggaaaaccttgggtacctcgacgtctacgacgtcacctgcgcgagg
gaccacagcttcatctcaaacggcctcatcagccacaactgcaactactcctcaaagatc
atcgaacccatacagtcgagatgcgccatcttccgcttcaggccgctgagcgacgaggac
atagcgaagcgcataaggtacatagccgagaacgagggactggagcttaccgaggacggc
ctgcaggccatactgtacgtcgcagagggggacctcaggagggcgataaacgtcctgcag
gcggcagcggccctcgacaggaagataaccgatgagaacgtcttcctcgtggcaagcagg
gcgagaccagaggacgtccgcgagatgatgcagctcgctctggagggcaacttcctgaag
gcgagggagaagctcagggagatactcctcaaacagggcctcagcggcgaggacgtgctg
attcagatgcacaaggaagtgttcaacctgccgattccggaggacaggaaggtcgccctg
gccgacaagataggcgagtacaacttccgcctcgttgaaggggcgaacgagatgatacag
cttgaggctttactcgcgcagttcacgattatgggcaagtga

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