Thermococcus cleftensis: CL1_1618
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Entry
CL1_1618 CDS
T02169
Name
(GenBank) DEAD-like helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thm
Thermococcus cleftensis
Pathway
thm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CL1_1618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thm03019
]
CL1_1618
03009 Ribosome biogenesis [BR:
thm03009
]
CL1_1618
Enzymes [BR:
thm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CL1_1618
Messenger RNA biogenesis [BR:
thm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CL1_1618
Ribosome biogenesis [BR:
thm03009
]
Prokaryotic type
rRNA helicases
CL1_1618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Phage_integrase
AAA_22
TYA
DUF2278
Motif
Other DBs
NCBI-ProteinID:
AFL95815
UniProt:
I3ZVT1
LinkDB
All DBs
Position
1542084..1543301
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AA seq
405 aa
AA seq
DB search
MSFESLGLSEATLVAVRQKGFETPTDIQREVIPRLLSGDVDIIGQSQTGTGKTAAFALPI
IEAIDPKVKAVQAIILTPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRALERG
THVVVGTPGRVLDHIRRGTLDLSSVRFFILDEADRMLDMGFIDDIEAIFRETPRRKRVLM
FSATMPREIRRLARRYMGDYEVVSVSSDELVPEMVDQEYVEVVPARKFTVLKKILDGDFY
GIIFCATKRETRELSEKLRRQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDVAAR
GLDVQDVSHIVNYSLPMTAEDYVHRIGRTGRMGKRGRAVTFIMPGEFKRLRYIAQVAGVE
IRKSELSEEIPKEYRERYEREERPRNYRNNRKGRRNYSRGYSRRY
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaagcttaggcttgtccgaggccacgttagtggccgtcaggcagaagggt
tttgagaccccaacggacattcagagggaggtcataccgcgtcttctatcgggcgacgtc
gatataatcggccagtcccagacagggacggggaaaacagcggcatttgcgctccccata
atcgaggccatcgacccgaaggtcaaggcggttcaggcgataatcctcacgcccacgagg
gagcttgccctccaggtggccgatgaaatcaagagcctccgcgggaggaagagggtttac
gtttacgcggtctacggtggccagccgattggtccgcagataagggccctcgagcggggc
acccatgtcgtagttggaacccccggaagggttctcgaccacataaggcgcggaaccctc
gatctcagctccgtcaggttcttcatactggacgaagctgacagaatgctcgacatgggc
ttcatagacgacatagaggcgatcttccgtgagactccgaggaggaagagggtgctgatg
ttctcggccacgatgccgcgggagataagaaggctcgcgaggcgctacatgggggactac
gaggtcgtgagcgtgagcagcgacgagctggtccccgaaatggtagatcaggagtacgtt
gaggtcgttcccgcgaggaagttcaccgtgctgaagaagatactcgatggggacttctac
ggcataatcttctgcgccaccaagagggaaaccagggagctgagtgagaaactcaggagg
cagggctacagcgccgaggccttgaacggcgacatgagccaggcagcgcgcgagagaacc
ttctggcgcttcaagacaaagcggacgagaattctcgtcgccaccgacgtcgccgcgcgc
ggcctggacgttcaggacgtgagccacatagtgaactattcactgcccatgacggctgag
gactacgtacacaggatagggagaacgggcagaatgggcaagcgcggaagggcggtgacc
ttcataatgcccggtgagttcaagaggctgcgctacatcgcccaggtcgcaggggtggag
ataaggaagtctgagctgagcgaggagataccgaaggagtacagggagaggtatgagcgc
gaggaacgtccgaggaactacagaaacaacagaaagggaaggagaaactattcccgcggc
tactcgagacgctactga
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