KEGG   Thermosynechococcus sp. NK55: NK55_08075
Entry
NK55_08075        CDS       T02977                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
thn  Thermosynechococcus sp. NK55
Pathway
thn02024  Quorum sensing
thn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NK55_08075 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    NK55_08075 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thn03019]
    NK55_08075 (hfq)
   03036 Chromosome and associated proteins [BR:thn03036]
    NK55_08075 (hfq)
Messenger RNA biogenesis [BR:thn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     NK55_08075 (hfq)
Chromosome and associated proteins [BR:thn03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    NK55_08075 (hfq)
SSDB
Motif
Pfam: Hfq_1 Hfq Coat_X
Other DBs
NCBI-ProteinID: AHB88894
LinkDB
Position
1690305..1690523
AA seq 72 aa
MTDEFNTALPSIRQVQTFIKDSTEVEVKLSTSDLVVGKVRWQDTNCLCVVDHYDQPTIIW
KQAIVFIKPKLA
NT seq 219 nt   +upstreamnt  +downstreamnt
atgacggatgaatttaacacggcactgcctagcattcgccaagtacagaccttcattaaa
gatagcaccgaggttgaagtcaagctcagcaccagcgatcttgtggttggcaaagtgcgc
tggcaggatacgaattgcctctgcgttgtcgatcactatgatcaacccacaattatttgg
aagcaggccattgtctttattaaaccgaagctagcctaa

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