Candidatus Thioglobus autotrophicus: SP60_00295
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Entry
SP60_00295 CDS
T04079
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tho
Candidatus Thioglobus autotrophicus
Pathway
tho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SP60_00295 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tho03021
]
SP60_00295 (rho)
03019 Messenger RNA biogenesis [BR:
tho03019
]
SP60_00295 (rho)
Transcription machinery [BR:
tho03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SP60_00295 (rho)
Messenger RNA biogenesis [BR:
tho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SP60_00295 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA
AAA_22
NACHT
OB_RNR_1st
Mor
S1CSD-TOTE-2
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALE51830
UniProt:
A0A0M4NVA9
LinkDB
All DBs
Position
complement(51978..53240)
Genome browser
AA seq
420 aa
AA seq
DB search
MKLSELKKSSPEELLELAQSLGAENISRAKKQTLIFIILKAKAANNEEVIGDGVLDILQD
GYGFLRSSDDSYTSGADDIYISPNQIKRFNLSIGDLVAGKIRAPKKGEKYFALVQVSEVN
GENPENVRNRVPFASLTPIHPDQRLSLEIGNGGTEDITARVIDLIAPFGKGQRGLLVAPP
KAGKTMIMQNIASSISRNHPECELIVLLIDERPEEVTEMARTVRGEVIASTFDEPAKRHV
QVAEMVIQKAKRRAEQGKDVIILLDSITRLARAYNTVAPSSGKVLTGGVDANALQRPKRF
FGAARNIENGGSITIIATALIDTGSKMDEVIYQEFKGTGNMELHLEKRLSEKRIFPAINI
NASGTRREELITDEKELQKLWILRKILHPMDTVEAAEFLIDRLKLTKTNDEFFASMAQKK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaaattatcagagttaaaaaaatcctctccagaagaattattagagctagcccagtca
ttaggtgctgaaaatatctcgcgagccaaaaaacaaacccttatctttatcattctaaag
gcaaaagccgctaataatgaagaggtaattggtgatggtgtattggatattttgcaggat
ggttacggatttttaagatcaagtgatgattcttatacttcgggtgcagatgatatttac
atctctcctaatcaaattaaacgctttaacttgtcaataggtgatttggttgcgggcaag
attcgagcacccaaaaaaggagaaaaatactttgctttggtgcaagtgtcagaagttaat
ggtgaaaatccagaaaatgttcgaaatcgagtaccgtttgcctcattaacgccaattcat
ccagatcaaagacttagtttagaaattggtaatggtggtacagaggatattactgcaaga
gtcattgacttaatcgcaccgtttggaaaaggtcaaagagggttgttagttgcgccgcca
aaagcaggtaagacgatgattatgcaaaatatcgcctcttcaatctcgcgcaaccatcca
gagtgtgagttgattgtattgttgattgacgaacgtccagaagaagtaactgaaatggca
agaacagtgcgtggcgaagtaattgcctccacgtttgacgagccagcaaagcgccatgtt
caggtggccgaaatggttattcaaaaagctaagagacgtgcagagcaaggtaaagacgtc
attattttattggattctattacgcgtcttgctagagcttacaatactgttgcaccttct
tctggaaaggttttaactggtggtgtggatgccaatgcactacaacgccctaagcgtttt
ttcggtgctgctagaaatattgaaaatggcggtagtattactattattgcaactgcattg
atcgatacaggctcaaaaatggatgaagttatttatcaagaatttaagggtacgggtaat
atggagcttcatttagagaagcgtttaagtgaaaagcgcatcttcccagctattaatatt
aacgcctctggcacacgccgtgaagagctaattaccgatgaaaaagaattacaaaaattg
tggattttaagaaaaatattacatcctatggatacggtagaagcggcagagtttttgata
gatcgattaaaactaaccaaaaccaatgatgaattttttgcctcgatggcacaaaagaaa
taa
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