Candidatus Thioglobus autotrophicus: SP60_03015
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Entry
SP60_03015 CDS
T04079
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tho
Candidatus Thioglobus autotrophicus
Pathway
tho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SP60_03015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tho03019
]
SP60_03015
03009 Ribosome biogenesis [BR:
tho03009
]
SP60_03015
Enzymes [BR:
tho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SP60_03015
Messenger RNA biogenesis [BR:
tho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SP60_03015
Ribosome biogenesis [BR:
tho03009
]
Prokaryotic type
rRNA helicases
SP60_03015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ALE52285
UniProt:
A0A0M3TU42
LinkDB
All DBs
Position
559043..560902
Genome browser
AA seq
619 aa
AA seq
DB search
MSEQNTNTASPKKFSDLGLSDSILGVLESIGYETPSPIQEQCITHLLNGEDIIGQAQTGT
GKTAAFALPLLDNIDLSLNAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQS
YDIQLRPLKRGVHCVVGTPGRVMDHIKKGTLKLDKLKSFVLDEADEMLKMGFIDDIKWVM
ERIPEQRQIALFSATMPSVIKRVAEEFLNKPKVVKVKTKTETATNIEQKYCLVGGLSQKL
DALTRILEVIEFDAMIIFARTKTLTVELAEKLAARGFTAEAINGDIQQSQREKIINKFKK
GSIDILVATDVAARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGRSGEAILFVSHRE
RRMLNNIERVTRQKITPIELPTAKIINEKRVNDFKKKITETISNRDLSVFEKLVGEFQEA
NEEVTHIKIAAALAHIAQGNEPLFLSEKEPSFGRDQKPGEEKIVPVQANSLKNNPQIPMR
RYKVAVGNNNNIKPGNILGAIANEADMDSEFIGSIQIFDNFSTVDLPDEMPKETFEVLKK
TIVNGNRLNIEALTEENNKATVGGSNQGKRNFGRKKFSKDSRGGYKGSKDGGRGDSRGKG
NRDDRGNRKPKFSRSKPKK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaaaacaccaacaccgcgtcacccaaaaaatttagtgacctaggcctttct
gattcaattctaggtgtactagaatcaattggttacgaaacgccatcccccattcaagag
cagtgtattacgcacttattaaatggcgaagatattatcggacaagcgcaaacaggcaca
ggaaaaacggccgcttttgcactgccattattagacaacattgatctaagtcttaatgcg
cctcagctgttaattttggcgccgacgcgcgagctagctatccaggtttcagaagcagtt
cagacttatgcacgcggcatgaaaggttttcacgtattgccaatttatggcggtcaatca
tacgacattcaattacgccccctaaagcgtggtgtgcattgtgtggtgggcacgccaggt
cgtgttatggatcatattaaaaaaggcacacttaaattagacaaactcaagtcttttgta
cttgatgaagctgatgaaatgctgaaaatgggctttattgatgatattaaatgggtcatg
gagcgcattccagagcagcgtcaaattgcacttttctcagccaccatgccatcggttatc
aagcgtgttgctgaagaatttttaaacaagcctaaagttgttaaagttaaaaccaaaaca
gaaactgcaacgaacatcgagcaaaaatattgcttggtgggtggcctcagtcaaaaatta
gatgcactaactcgaattctagaagtaatagaatttgacgcaatgattattttcgctaga
actaaaactttaacggttgaattagcggaaaaattagctgcaagagggtttactgcagaa
gctatcaatggcgatattcagcaaagccagcgagagaaaatcattaacaaatttaaaaaa
ggtagtattgatattttagttgcgactgatgttgcagcacgtggattagatgtaccgcgc
atctctcacgtagtgaactacgacatccctcaagacgctgaaacctacgtacaccgtatt
ggtcgtacaggtcgtgcaggtcgttcaggtgaggcgattttattcgtatcacatcgcgaa
cgtcgcatgctcaacaatattgaacgcgtgactcgtcaaaaaattacaccaattgaattg
ccaacagcaaaaatcatcaatgaaaagcgtgttaatgattttaaaaagaaaattactgaa
actattagcaatcgagatttaagtgtttttgagaagttagttggtgaattccaagaagct
aatgaagaagtaacacatatcaaaattgccgcagcattggcacatatcgcccaaggcaat
gagcctttgtttttatctgaaaaagagcctagctttggcagagaccaaaaacctggcgaa
gaaaagatagttcctgtacaagctaactcgctaaaaaataacccgcaaattccaatgcgc
cgctacaaagttgcagtaggcaacaataacaatattaagcccggcaacattcttggcgct
attgccaatgaagcagacatggatagcgaatttatcggctctattcaaatatttgacaac
ttctcaacggtagacctacctgatgaaatgccaaaagagacttttgaggtattgaaaaaa
accattgttaatggcaatcgtttaaatattgaagcactcactgaggaaaacaacaaagca
accgttggcggctctaatcaaggtaagcgcaactttggtcgcaagaaattctctaaagac
tcgagaggcggctacaaaggctctaaagatggtggcagaggtgatagtagaggcaaaggc
aacagggatgatagaggaaatcgaaagcctaaattttcacgctcaaaacctaaaaaataa
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