Thermosipho sp. 1063: BG95_04370
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Entry
BG95_04370 CDS
T04625
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thp
Thermosipho sp. 1063
Pathway
thp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG95_04370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thp03019
]
BG95_04370
03009 Ribosome biogenesis [BR:
thp03009
]
BG95_04370
Enzymes [BR:
thp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BG95_04370
Messenger RNA biogenesis [BR:
thp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BG95_04370
Ribosome biogenesis [BR:
thp03009
]
Prokaryotic type
rRNA helicases
BG95_04370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
Helicase_RecD
AAA_19
AAA_30
AAA_7
Flavi_DEAD
Cas3-like_C_2
Mit_KHE1
Motif
Other DBs
NCBI-ProteinID:
APT72126
UniProt:
A0A1L7BEW6
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All DBs
Position
863719..865266
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AA seq
515 aa
AA seq
DB search
MNFEDFNLSEKTLRAIYEKGFETPTPVQEKVIPILLKKEKNLIVQAKTGTGKTAAFGIPL
IELLENKGYVQAIILTPTRELALQVSEEINSLKRKRLKILPIYGGQSIKRQIDHLKRGVD
IVVGTPGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKNTNGEKFFLMFS
ATIPKRIIDLAKKYIKNYEVIKILDKQLTTNLTEQIYIELNESDKFEALCRIIDVEDDFY
GMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKKINILVATDVAAR
GIDITGLSHVINYSIPLNPEHYVHRIGRTGRAGKEGIAITFVTPKEYRQLFRIKKFSKAK
IKEGKIPSVEQIIKARSEKIKKDILNHNKNIQKVYYNLADELLEKAEPREVVAKLLSTAF
KSLNPENYKKVSPTSKAKEVVRLFIAKGKQAGLTKKDLVKFIVEKTNINPKVISDVLVLD
KFSFITVPYKEAEIILSIFKKRGRRSLISKAKERN
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgaactttgaagattttaacttaagtgaaaagacgcttcgcgcaatttacgagaaagga
tttgaaacaccaacacctgtgcaagaaaaggtaatacctatactgctaaaaaaggaaaag
aatttaattgtacaggcaaagacaggcacgggaaagactgcggcatttggaataccactc
atagaacttttggaaaacaaggggtatgtccaagcgattatactcacccctacacgtgaa
ctggcactgcaagtttcagaggagataaactctttaaaaaggaagaggctgaagatactt
cccatatacggaggacagtctataaagaggcaaatagaccatctaaaaagaggtgttgat
atagtagttggtacaccgggaaggatccttgaccatctagaaagaaagacgatagacctt
tcaaaagtagagtactttatcttagatgaagcagatgaaatgcttgatatgggctttata
gacgacgtggaaaaaatactgaaaaatacaaatggtgaaaaattctttttgatgttttct
gcaacgatcccaaagagaatcatagaccttgcaaaaaaatacatcaaaaactatgaagtt
ataaagatacttgataaacaactcaccacaaaccttacagaacaaatatacatagaatta
aacgaaagcgataaatttgaagcactttgcagaataatagacgtggaagatgatttctac
ggtatggtattctgtagaacaaaagtagaagtagatactgtatcttcaaaactcattgaa
aggggatacgacgcagaagcactacatggagatttttcacaataccaacgtgagagggta
ttgaaaaaatttaaagaaaagaagataaatatacttgtcgcaactgatgttgcagcacgt
ggaatagatattaccggtttatctcacgtaataaattactccattccacttaaccctgaa
cactacgtgcatagaataggtagaacgggaagggctggaaaagaaggtatcgccataacg
tttgttaccccaaaagaatacagacaactctttagaataaagaaattttcaaaggcaaag
atcaaagaaggtaaaatcccttcagtggaacaaataataaaggcaagatcggaaaaaata
aaaaaagatattttaaatcataataaaaatatacagaaagtatactacaaccttgctgat
gaactccttgaaaaagcagaaccaagagaagttgtagcaaagcttttaagtactgctttt
aaatctttaaatccggaaaattacaaaaaagtatcacctacttcaaaagcaaaagaagtt
gtaaggttgtttatagcgaaaggaaaacaagctggtcttaccaaaaaagatctagttaaa
tttatcgttgaaaaaaccaacataaatccaaaagtaataagtgatgtacttgttttggac
aaattttcatttataaccgttccatacaaagaagcggaaataatactatcaatctttaaa
aaacgtgggagaagatccttaatatccaaagcaaaagaaagaaactag
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