Thermosipho sp. 1063: BG95_04535
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Entry
BG95_04535 CDS
T04625
Name
(GenBank) ATPase AAA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
thp
Thermosipho sp. 1063
Pathway
thp03420
Nucleotide excision repair
thp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
thp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BG95_04535
03430 Mismatch repair
BG95_04535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thp03400
]
BG95_04535
Enzymes [BR:
thp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BG95_04535
DNA repair and recombination proteins [BR:
thp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BG95_04535
MMR (mismatch excision repair)
Other MMR factors
BG95_04535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_11
DEAD
DUF3427
ResIII
Motif
Other DBs
NCBI-ProteinID:
APT72159
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All DBs
Position
893291..895174
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AA seq
627 aa
AA seq
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MFEKELDEEQYEAVTKSQGKTLVIAGPGSGKTRVITYKIAYLINSGVKPQEIMLVTFTKA
AAKEMLQRAKIVSKSNLEGITAGTFHHVCNLFLRRYGSTIGLKPNFTILDSEDAKDLMES
IRSQLIPKSERKTVPTAKQLLSIYSYMNNTLSSLKEAITRYNPRFLEQEHTIEQILIKYQ
QEKQAQNSVDYDDLLIHTLHILSTSKSIRLRESERYKWILVDEFQDTNIVQFKIVELLST
VHKNLIVVGDDAQSIYSFRGARFENVLDFQKEAETFKIQTNYRSSQEIVNFINEMLPKKS
IKKTLCAKRSTGIKPFLVQVFDHYDEADFVANEIVNFQHNGISLNDIAVLYRAHAHSLEL
QLELSKHNIPFKLYSGLRFTETAHVKDCMAFLKTTVNPEEKISWIRLLKLVNGIGNIKAN
NYAEEISKIGYSALDKIKEKSSDFKKLRETIKNTLTVENPGERIKIFYIDFYHKKMEEKF
EDYKDRREDIERLIEMASFYKNTENFIGDILISESYEMRNEDNEKEKVTLTTIHQAKGLE
WKVVFILSVNPGDFPHIMSLRENNIDEEERLFYVAITRAKDYLYIIHSIGGSSRIFYGND
YLIRRGKSFIDEIPFHLVEHLEYGVEK
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaagaacttgatgaagaacaatatgaagcggtaacaaaatcacaagggaaa
acattagtaatagcaggacctggcagtggtaaaacaagggtaattacatacaaaatagca
taccttataaactccggtgtaaaaccacaggagataatgcttgttacatttacaaaagca
gctgcaaaagaaatgctacaaagggctaaaatagtttcaaaatcaaatctagaaggtatt
acggcaggtacgttccatcatgtatgtaacctatttcttagaagatatggaagtacaatt
ggactaaaaccaaactttaccatcctagatagtgaggatgcaaaagatttaatggaaagc
attagaagtcaattaataccaaagtctgaaagaaaaacagtaccaactgcaaagcaactg
ctctcaatatattcatatatgaacaatacactttcatcgctaaaagaagcaataacaaga
tacaatccaagatttctagaacaagaacatacaatagaacaaatattaataaaataccaa
caagaaaaacaagctcaaaattctgtagattatgatgaccttttaatccatacactccac
atactttcaacaagcaaaagcatcagattaagagaatcggaaagatacaagtggatactc
gttgatgaatttcaagacaccaatatagtacaatttaaaatagtagaactactatcaact
gtacataagaacctaatagttgttggagacgatgcacaaagcatttattcatttagaggt
gcaaggtttgaaaatgtactcgatttccaaaaagaagcagaaacattcaaaatccaaaca
aattacagaagttcacaagaaatagtcaattttataaacgaaatgctcccaaaaaaatct
ataaagaaaacattatgcgcaaaaagaagtacaggtataaaaccatttttagtacaagta
tttgaccattacgatgaagcagattttgtagcaaatgaaattgtaaactttcaacataac
ggaatatccttaaatgacattgcagtgctatacagagcacacgcacattcccttgaactt
caacttgaactttcaaaacataacattccttttaagttatactctggtttacgatttacc
gaaacagcacatgtaaaagattgcatggcatttctaaagaccacggtaaatcctgaagaa
aagatttcatggatacggctcctaaaacttgtaaatggcataggaaatataaaggcaaac
aactatgcagaagaaatttcaaaaataggatatagcgcattagacaaaataaaggaaaaa
agttccgattttaaaaaactaagggaaactattaaaaatacactaactgtagaaaatcca
ggtgaaagaataaagatattttacatagacttttatcacaaaaaaatggaggaaaaattt
gaagattacaaagatagaagagaggatatagagcgccttatagaaatggcgtcattttac
aaaaacaccgaaaactttattggtgatatattaataagtgaaagctatgaaatgagaaat
gaagacaacgaaaaagaaaaggtaacacttactactatccaccaggcaaaagggcttgaa
tggaaagtagtttttattttaagtgttaaccccggtgattttccacatataatgagtcta
cgcgaaaataacatagatgaagaagaaaggttattttatgttgcaataacacgtgcaaaa
gattatctatacataatccacagtataggtggttcatctagaatattctacggaaatgat
tatctaataagacgtggaaagagctttatagacgagataccctttcaccttgttgaacac
cttgaatatggagttgaaaaatga
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