Thermosipho sp. 1063: BG95_05930
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Entry
BG95_05930 CDS
T04625
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
thp
Thermosipho sp. 1063
Pathway
thp03030
DNA replication
thp03430
Mismatch repair
thp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BG95_05930 (polC)
03430 Mismatch repair
BG95_05930 (polC)
03440 Homologous recombination
BG95_05930 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thp03032
]
BG95_05930 (polC)
03400 DNA repair and recombination proteins [BR:
thp03400
]
BG95_05930 (polC)
Enzymes [BR:
thp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BG95_05930 (polC)
DNA replication proteins [BR:
thp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BG95_05930 (polC)
DNA repair and recombination proteins [BR:
thp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BG95_05930 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
HHH_3
DEDDh_C
DUF655
YhfH
RNase_H_2
tRNA_anti-codon
Anticodon_2
Zn_ribbon_8
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-ProteinID:
APT72402
LinkDB
All DBs
Position
1157269..1161348
Genome browser
AA seq
1359 aa
AA seq
DB search
MKYVFDELSYPITNIAEYFNIEIDGEVTKVIYDQSNRLLIFYIKKGVGDFQLLREKLRVF
FGIDVEFEYELLELKKEEILELLNGTAPYVKDVEVFENEILVKTFSEFAVKKIEKKLKNI
EKITGKPVKIEFVKEKFEPPRVVEEKIKTFTDKERYYFPSNIPLNAKKVFLRGKVFKLEK
SDYLSTILVYITDKKESVLGKIFDEKFESTLSVGNWYYFKGSMNVSKKGEYYFGISEIYE
DPNPIERQDISDMKRVELHLHSKMSDLDAIIDIKELVKKVKRWGWNAVAITDHGNVQSIP
YLFEEAEKNGIKPIFGTEMYILNETGDIVKNLSDDFDLSEVTYTVFDLETTGTNARFDEI
IEIGAVKYRNGEIIDKFSTFVKPTKKVSDFTQKLTGITNEMLEDAKDIYEVFPKFLEFIE
GTVLVAHNADFDYGFIREVYRKLHKKDLVLPYLDTLKLSKEVLRGKVKSFGLGRLVEYFK
LGPFKHHRAFDDASVTVKLFEKLLELVIRRGIRTLKQVNNLKSSSYSSIRTKRQFNHLTI
LVKNKVGLKNLYKLVSDAHVKYFKYVPFIPKKELIRYKEGLLFGTGCENGEIFQALTGSS
TDEEILEMLKEYDFVEIFPIDTVVNVEKDVAKQVFRRLYNLAKRLDLPVVMVSNAHFLEP
EDIKARHVLLAPVEKSNPNDDDLKDKNAMLYLRTTQEMLKEAMEIFEDEDIAREVVVENT
NKIADMIEYVKPVKRKLHPPIIEGADENVRNLSITRAKELYGEPLPEIIEKRLEKELKSI
IDNGYAVLYEIAHLIVKKANEDGYVVGSRGSVGSSFVAYLMGITEVNPLPPHYLCPECKY
LEFSKEVGSGYDLPSKKCPKCGVELVKTGQDIPFETFMGFKGDKVPDIDLNFSGEYQDRA
HNYIVELFGKDNVLRAGTISTIAERSAIGYVKSYMEVKGESLQTAEQIRLAEMVAGVKRT
TGQHPGGLMIVPKDMTVYDFTPIQYPANKKDSGMCTTHFAYESIHDDLVKLDALGHDDPT
MLKLLQEYTGIDPTKVPMDDKETLQIFSSLKSLKIKANDLGTDVGTIGIPEFGTDFVQKM
LKETRPKTFAELVRISGLSHGTDVWLNNAQDIISSGKATLSEVISCRDDIMIYLIDAGVD
ESRAFKIMENVRKGKGISEEDEQIMREKNIPEWFIQSCKKIKYLFPKAHAVAYVSMAFRI
AYFKVHYPLAYYAAFFSIKGDEFSVKTILKGKKAIKKRLVELGAQIKKDVKEKNEEKVLE
AALEMYLRGFEFLPPDIFKSDYRRFIIEDNKLRIPLNKIPGVGDSVALSILQARKGKAFT
SIEDLKRRTKLSKAHIDTMKKLGVLKDLPETDQSSLFDF
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacgtttttgatgaactaagttatccaattacaaatatagctgaatattttaat
attgagatagatggtgaagttacaaaagtgatttacgaccaaagtaaccgccttttgatt
ttctatataaagaagggagttggggattttcagttacttagggaaaagttaagggttttt
tttggaatcgatgttgaatttgaatatgaacttcttgaactaaaaaaagaggaaatttta
gaacttttgaatggaacggcgccttacgtaaaagatgtggaggtatttgaaaatgagatt
ttggtaaaaacttttagtgaatttgccgtgaaaaaaatagagaaaaagttaaagaacata
gagaaaattacgggcaaacctgtaaagattgaatttgttaaagaaaaatttgaaccacca
agagttgttgaagaaaaaataaaaacttttaccgataaagagagatattattttccatcc
aatatacctttgaatgctaaaaaagtatttttaaggggaaaggtgttcaagttagaaaag
tcagattatttatcaactattttagtatatatcaccgataaaaaggagtctgttttggga
aagatttttgatgaaaaatttgagtcaacacttagtgtgggaaattggtattattttaaa
ggttctatgaatgtcagcaaaaaaggagaatattattttgggatttctgagatctatgaa
gatccaaaccctattgaacgacaagatatttcggatatgaaaagagtagaattacatctt
cattcaaaaatgagtgatttagatgctattatagatattaaagaattggtaaaaaaagta
aaaagatggggttggaatgcagttgcaattacggatcacggtaatgtacagtccattcct
tatttgtttgaggaagcggaaaaaaatggtattaaacctatatttggtacggaaatgtac
atattaaatgaaacaggggatatagtaaaaaatttatcggatgattttgatttaagtgag
gttacatacactgtatttgaccttgaaacaacgggtacgaatgctagatttgatgaaatt
attgaaataggtgcggtaaagtatagaaatggggagattatcgataaattttctactttt
gtaaaacctacaaaaaaagtctcagattttactcaaaagcttacaggtattacaaatgag
atgttagaagatgcaaaggatatatatgaagtttttccaaaatttttggaatttattgaa
ggtacagttttagtagcacataatgcagattttgattatggatttataagagaagtttat
agaaagttacacaaaaaagacttagttcttccctatttggatactttgaaactttccaaa
gaagttttaagagggaaggtaaaatcttttggacttggaaggcttgtggaatactttaaa
ttaggcccatttaaacatcatagggcttttgacgatgccagtgtaactgtaaagttgttt
gaaaaattattagaacttgttataagacgcggtataaggactttaaaacaagtaaataac
ttaaagagtagctcttattctagtattagaacaaagagacaatttaatcatctgactata
cttgtgaagaataaagtggggttaaaaaatctatataaacttgtatctgacgcgcatgta
aaatactttaaatatgtaccatttattccaaagaaagagttgataagatacaaagaagga
cttttatttggtactggatgtgaaaatggtgagatttttcaagcattaacgggttcttca
acagatgaagaaattttagaaatgctaaaagagtatgattttgtggagatttttccgata
gataccgtagtaaatgttgaaaaagatgttgcaaaacaggtttttagaaggttatacaat
ttagccaagagattggatttacccgtggttatggttagtaatgcacattttttagaacca
gaagacatcaaagcaagacatgtactacttgcaccagtggaaaaaagtaatccaaatgat
gatgatttaaaagataaaaatgcaatgttgtaccttagaactactcaagaaatgctaaaa
gaggcaatggaaatttttgaagatgaggatatagcaagagaagttgtagttgaaaacacc
aataaaattgcagatatgattgaatatgtaaaaccagtgaaaagaaaattgcatcctcca
attattgaaggtgctgatgaaaatgtaaggaatttatctattacccgcgcaaaggaactt
tacggtgagccgcttccagagattattgaaaaacgtttggaaaaagaattaaaaagtata
atcgacaacggctacgcggtgttgtatgaaattgcacaccttatagttaaaaaggcaaac
gaagacggttatgtagttggctcgcgtggttcagttggttcttcgtttgtcgcatacctt
atgggaattacagaagttaatcctctaccgcctcattatctttgtcctgaatgtaaatat
ttggaattttcaaaagaagtaggttctggatatgatttgcctagtaaaaagtgtccaaaa
tgtggagtagagcttgtgaaaacggggcaggatataccttttgaaactttcatgggattc
aagggggataaagtacctgatatagacttaaatttttctggagaatatcaagatagagct
cataactatattgttgaactttttggaaaggacaacgttttaagggcgggaactattagt
acaatagcggaacgaagtgctattggttatgtgaaaagttatatggaggtaaaaggtgaa
agtttacaaactgcagagcaaattagattagctgaaatggttgccggtgttaagaggaca
accggtcagcatccaggtggattgatgatagttccaaaagatatgactgtgtatgatttt
acacctatacagtatcccgcaaataagaaagattcaggaatgtgtacaacgcactttgca
tatgaatccatacacgatgatttggtgaaattggatgcattgggccacgatgatcccaca
atgttaaagcttttgcaagaatatacaggtattgaccctacaaaagtcccaatggatgat
aaagaaacattgcaaatattttcttctttaaagtctttgaagatcaaggcgaatgattta
ggtactgatgttggaacgataggtattccagaatttggaacagattttgtgcaaaaaatg
ttgaaagaaactagaccaaaaacatttgcagaacttgtaaggatttctggactttcacat
ggcacagatgtatggcttaataatgcacaagatataataagttctggaaaagcaactctt
tcagaagtgatatcatgtcgcgatgatataatgatatatctcatagatgcaggggttgat
gagtctagagcatttaagataatggaaaacgtgagaaaaggaaagggtatttcagaagaa
gatgaacaaataatgagggaaaagaatatcccagaatggtttatacaatcttgtaaaaaa
ataaagtatctttttcctaaagcccatgctgttgcttatgtaagtatggcctttagaata
gcgtattttaaggtgcactatccacttgcatattatgctgcgtttttttctataaaaggt
gatgaattttctgtgaaaactattctaaaaggtaaaaaggcaataaaaaaacgactcgta
gaattaggtgcacagataaaaaaagatgtaaaagagaaaaatgaagaaaaagtactagaa
gcagctcttgagatgtatttaaggggatttgaatttttgcctcctgatatatttaagagt
gattatagaagatttattattgaagataataaattaaggatacctctaaataaaattcca
ggcgttggagatagcgttgctctatccattttacaagcaagaaaaggaaaggcctttact
tcaattgaagatttaaaaagaagaactaaattaagtaaagcacatattgatactatgaaa
aaattaggtgttttgaaagatttacctgagactgatcaatcttctttgtttgatttttag
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