Thermotoga sp. 2812B: T2812B_02390
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Entry
T2812B_02390 CDS
T03494
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thq
Thermotoga sp. 2812B
Pathway
thq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T2812B_02390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thq03021
]
T2812B_02390
03400 DNA repair and recombination proteins [BR:
thq03400
]
T2812B_02390
Enzymes [BR:
thq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T2812B_02390
Transcription machinery [BR:
thq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T2812B_02390
DNA repair and recombination proteins [BR:
thq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T2812B_02390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AIY86027
UniProt:
A0AAN0W1D1
LinkDB
All DBs
Position
complement(466160..471232)
Genome browser
AA seq
1690 aa
AA seq
DB search
MPMSSFKRKIKAIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKD
YECACGKYKGKKYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTL
LNMSTSDLENIIYYGSRRVIERAFIVTDPKDTPFSQGDVIYETEYRIYRKKWDFDVEQAF
VVKNPKSPVLSDIDGEVTLKTEKSITGREITWIIVKNITRATHTVLPGMILVVKDGQEVE
KGQDLTKEMTIDPVYAPFDGHVEIDELSNTITLKPLTTSKDQPVVFTIPYGAKILVSNGQ
KVKKGDQITTSTSLPAVKASISGTVRFGSNLNIRALEDGNFEVLSTGEVYVEQVIEERKY
PVFEGALVYVNNGDQVKKGDHLADRFLFEEEYLSATEYKIFESHYPTMFDVEERTENDRP
IVVITDIDPEVSKETGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEAL
QAEIEAELKKLPSSSSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIE
GGRFATTDLNELYRRLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGK
RSRRAVLKDRNGRPLKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPNLKIHQCGIP
KKMAMELFKPFVLAKLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAP
TLHRMSIQAFEPKLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSR
YNIISPAHGKPISLPTQDIIIGSYYLTTVGKEFDSLKEEDVKWKFSSPEEAMLAYHLGFI
KLHTPILIKVAVNGEEKRIKTTLGRVIFNGILPEDLRDYNRIFDKKQINALVYETFKRHG
IDRAADLLDDIKDIGFHYATVSGLTLSLKDLKIPPERDEILRKTWEKVRIIEENYEKGFL
TEEQRKSEIIRLWMSVTEEITKLTSKTLAEDPFNPIYMMVNSGARGNIDQVKQLAGIRGL
MIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTYGARKGQVDTA
MNTSFAGYLTRRLVDVAQSVTVAEPDCGTHEGIRAMDLIKEGTVVEKMNEFLFGRVLARD
VLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRYEEIDITELSLPNMYA
EIAEPVGEYEEGTELTWDVIKAAKNEGKYRIKVKVYPVVGTVYAEEEPLYDKKGERQLLV
YQEVINEIVAKMLEENGIEKVSVRPDIIVRSPLTCESEYGVCAACYGMDLSNHKIVNVGE
AVGVVAAQSIGEPGTQLTMRTFHVGGVMGASDIVSGLTTVEKTFEPYAFLREEKSGGKKE
IRKYYGSEAILCEVDGFVKDIATDESGRTVIYIEDYAGNIHAYKVPKRAKVRVEKGQKVL
RGETLTSGAIVWWKLLELESEKGVMTAMNLLKIIKNAYVQQGVSIHDKHFEIIFKQMLSM
ATIVDPGDSDYLPDQLVPLVDIKRFNREILEGNAKVEENRKWVIGKTLAKRIITETEEGE
LVELAQKGDEVTEELLKKIIEAGIKEIDVFEKDKVVTYQILPKEPIKYKRRLLSLKKAAL
NYPGWLSAAAFEETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPAGTGLDVFAGIQVEET
PRAAVEEELA
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgccaatgtcctctttcaagaggaagataaaggcaattcagataaagatagcctctccg
gaagtgataagaagctggtctggaggagaggtcaagaaaccagaaacgatcaactacagg
acattcaagcccgagagagacggccttttctgtgagaggatttttggtcctgtgaaggac
tacgaatgtgcctgtggtaagtacaaggggaagaaatacgaaggtaccgtctgtgaaagg
tgtggagtcagggtcgaatccagagaagccagaagaaaaagaatgggacacatagaactg
gcagcacccgctgtgcacatctggtatctcgagagcataccgagtgttctcggaacactc
ttgaacatgagcacttcagacctggaaaacatcatctactacggcagtcgccgtgtcata
gaaagagcttttattgtgactgatcccaaagatactccgttctcccagggggatgtgatc
tacgagaccgagtacaggatatacagaaaaaagtgggatttcgatgttgaacaggcgttt
gtggtgaagaatccaaaatctcctgttctttccgatatcgatggagaagtgactttgaag
acagaaaagtccatcacaggaagggaaatcacctggatcattgtgaagaacatcaccaga
gccacacacacggtgctccctggaatgattctcgttgtgaaagatggccaagaagtggaa
aaaggacaggatctgacaaaagaaatgacaatcgaccctgtttacgctccgtttgacggt
cacgtggaaatagatgaactttcgaatactattacgttgaaacctctcacaaccagtaag
gatcagccggttgttttcacgattccttatggagcgaagattcttgtttcgaacggccag
aaggtgaaaaaaggtgatcagatcacgacttctaccagcctcccagccgtcaaagcgagc
atatctggtacagtgagatttggttccaacctcaacataagagcacttgaagacggaaac
ttcgaagtcctttccaccggtgaagtctatgtagaacaggttatagaggagagaaaatat
cctgtctttgaaggagcgcttgtctacgttaacaacggcgaccaggtgaagaaaggagat
cacctggctgacagattcctcttcgaggaagaatacctctctgccaccgagtacaaaatc
ttcgagtcgcactatccaaccatgttcgatgttgaagagagaacggaaaacgacagaccg
attgtggtcataacggatatagatcccgaggtttccaaagaaacgggtttgaaggttggc
gatatagtcacagaaaacgagtacgaagcataccttcagatctatccagaaaagatagtg
gctgatgccggggcacaggcgataaagaaactgcttcagaatctggatctggaagcgctt
caggcagaaattgaagcggaactcaaaaagttaccttcttccagctcgaaggcgataaag
ctcagaagaaggttgaagatggtaaaggatttcctgaaatctggtaacaaacccgaatgg
atggttcttgaggttgttcctgtgattccacccgacctcaggccgatgatacagatcgag
ggaggaaggttcgccacaacagacctcaacgaactttacagaagactcataaacagaaac
aacagactcaaaaagcttctggagctcggggcacctgagatcattctgagaaacgagaaa
agaatgcttcaagaagcggttgacgctctcattcacaacggttctgattcggaaggaaag
agaagcagaagagccgttttgaaagatagaaacggtaggcctctgaaatcgctcaccgat
ctactgaaaggaaagaaaggaagattcagaaggaacctgcttggaaagcgtgtggattac
tctggaagagcggttattgtcgtgggcccaaatctgaagatacaccagtgcggtattcca
aagaaaatggcaatggagctcttcaaaccgtttgttctggcgaaactccttggagagggt
tcttccagcaaaaccatgagaaaggtcaagaaagcgatcatagaaaaagagatgccggaa
gcctgggaagtgcttgaagaagtgataaagggaagcgtcgttcttttgaacagagctccc
acactccacaggatgtcaattcaggcgtttgaaccaaaactcgttgaaggaaacgccata
cagctccatcctgtcgtgtgtccaccattcaacgcggattttgacggtgaccagatggcg
gttcatgtaccgctttcggccgcggcgcaggcagaggcaagatttctcatgctttcgaga
tacaacatcatctccccagcacacgggaagccgatttcgctgccgacgcaggatatcatc
ataggttcttactacctcacaacagttggtaaagaattcgactcactgaaagaagaagat
gtgaaatggaagttctcttcgcccgaagaggcgatgctggcttaccaccttggattcata
aaacttcacactccgattctgataaaggttgctgtcaacggcgaggaaaaacgaataaag
acgactctgggaagagtgatcttcaacggcattctcccggaagatttgagggattacaat
agaattttcgacaaaaaacagataaacgctctcgtctatgaaacgttcaagagacacggt
atagacagagctgcggatctcttggatgacataaaagacatcggtttccactacgcaacc
gtttccggtctgactctctcgttgaaagatctgaagataccaccagagagagatgagatt
ctcaggaagacctgggagaaggtcagaataatcgaagagaattacgaaaagggcttcctg
acggaggaacagagaaagagtgaaatcatacgactctggatgagtgtgacggaggagatc
acaaaactcacatccaaaacgctcgcagaggatccgttcaaccccatatacatgatggtg
aactctggtgctagaggtaacatagatcaggtgaaacagctcgccggtatcagaggtttg
atgatcaaggcgtacgacccaagatccagggaaataaagtccaagatcttcaagggtcag
gcgatccacgaagcactcacattcgattacccggtcgataagaacctcagagaaggtgtt
gacatcctgcagttcttcatttccacctacggtgccagaaaaggacaggttgacacagca
atgaacacatcctttgcgggatatctgacgaggcgtcttgtggatgtagcccagagcgtt
acagtggcggaacccgactgtggaacacatgagggaatcagagccatggatctgataaaa
gaaggaacagtcgtggaaaagatgaacgagttcctcttcggtagagtgctcgcaagggac
gtgcttgatccagaaacaaaagaagttttaaagaatccagaaacgggcaaggaatacacg
agaaacaccatgctcacagacgacgatgcgaacttcctggcttcttacaagaaaatggtt
gacgttgtgaggtacgaagagatagacataacagaactctcactccccaacatgtacgcc
gagatagcagaacccgttggagagtacgaagaaggaacggaactcacctgggatgtgata
aaagctgctaagaacgaagggaaataccgcataaaggtgaaggtctatcctgtcgttgga
actgtttacgcggaagaggaacctttgtacgataaaaaaggtgaaagacagcttctcgtg
taccaggaagtgataaacgagatcgtggcgaagatgctcgaagaaaatggaatagaaaaa
gtttccgtgagacccgatatcattgtgagatcgcctctcacctgtgagtccgagtacggc
gtctgcgctgcctgttacggtatggatctttccaaccacaagatagtgaacgtcggagaa
gcggtgggagttgtggccgctcagtccataggagagcccggcacacagctcacgatgaga
acattccacgttggaggagtcatgggtgcgagcgacatcgtcagcggtctcacaactgtg
gagaagacgttcgaaccgtacgcgttcttgagagaagaaaagagcggtggaaagaaagaa
atcagaaaatactatggatccgaagccattctgtgtgaggtcgatggtttcgttaaagac
atagcaaccgatgaaagtggtagaacggtgatttacatcgaggattacgccggtaacatc
cacgcttacaaagtaccgaagagagcgaaagtaagggtagaaaaaggccagaaagtcctg
agaggagaaaccctcaccagcggcgccattgtgtggtggaaactcctggagctcgaatca
gaaaaaggtgtaatgacggcgatgaatctgctgaagatcataaagaacgcctacgtccag
cagggtgtgagtatacacgacaagcacttcgagatcatattcaaacagatgctaagcatg
gcaacgatcgtcgatcctggagacagcgattacttgccggatcaacttgtgccgcttgtg
gatataaagagattcaacagggaaatcctcgaaggaaatgcgaaagtggaagagaacagg
aagtgggtcataggaaagacgctcgcgaagaggatcatcacggaaacagaagagggagaa
ctcgtggaactcgcgcaaaaaggcgatgaagtgaccgaggaacttttgaagaagatcata
gaagcgggaataaaagagatcgacgtcttcgaaaaagataaagttgtgacgtaccagatt
ctcccgaaggaacctatcaagtacaagagaagactcctgtcgctcaagaaagcggctctt
aactaccccggctggctcagcgcggctgcgttcgaagaaactgcgtgggtgttgaccgca
gcggcgatcgaaggaaaggtcgatccgctcattggattgaaggaaaacgtgatcgttggt
cagctgatacccgcaggaaccggtctcgatgtcttcgcgggaatccaggtggaagaaacc
ccaagggctgcagtggaagaagaactcgcgtga
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