Thermotoga sp. 2812B: T2812B_04875
Help
Entry
T2812B_04875 CDS
T03494
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
thq
Thermotoga sp. 2812B
Pathway
thq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T2812B_04875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thq03019
]
T2812B_04875
Messenger RNA biogenesis [BR:
thq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T2812B_04875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Lectin_N
TMP_3
Cas3_HD
Spore_YhcN_YlaJ
Motif
Other DBs
NCBI-ProteinID:
AIY86518
UniProt:
A0AAN0W1D3
LinkDB
All DBs
Position
1001195..1002721
Genome browser
AA seq
508 aa
AA seq
DB search
MMLWYIVAGAGGLLIGYLIANYQINQKLRKAKEDAQTIIEKAEKEANEIKKKAIIEGREE
VHRLREEFEKERSRREEELRALEERLLKREELLTRKEENLEKREQQVEELKANLEEKMRE
VEEKEKRIDEELKRLAGMTVEEARELILDEARQRYEHDLAKLYKEMKEQVEEEAEKEAKK
VIAFAVQRYAPDYVGEITVSTVSLPSDDMKGRIIGREGRNIRTFEKITGVDLIIDDTPEV
VVLSCFNPLRREIARITLEKLVADGRIHPARIEEMYEKAKQEVEKAIKEAGQEATFKAGV
MGLHPELVKLLGKLKYRTSYGQNVLNHSIEVALLAGYMASELGLNADKARRGGLLHDIGK
AVDQELEGSHTTIGAELARRYGEKEDIINMILSHHGEEEPMTPEAVLVAAADALSAARPG
ARRESLENYIKRLMKLEEIAKSFKYVEKAYAIQAGREIRVIVEPDKVDDALAEKLAYDIS
KKIEEELEYPGVLKVVVIREKRSVAYAK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtggtacatagtagcaggagccggtggtcttctgattggatatttaatagca
aactatcagataaatcaaaagctcagaaaagcgaaagaagacgctcaaaccatcatcgag
aaagcagaaaaagaagcaaacgagataaaaaagaaagcgataatagaaggaagagaggaa
gttcacaggctcagagaggaatttgaaaaagagcgatccagaagagaagaggaattgaga
gcattagaagaaagactcttgaaaagagaagagctcctgacaagaaaagaagagaacctt
gagaaaagggaacagcaggttgaagaactcaaagcaaatctggaagaaaaaatgagagag
gtcgaagaaaaggaaaaaagaatcgacgaagaattgaaacgccttgccggtatgactgta
gaagaggcaagagaactcatcctcgatgaagccaggcagaggtacgaacacgaccttgcg
aaactctacaaagagatgaaagaacaggttgaagaagaagctgagaaggaagccaagaaa
gtcatagcattcgctgttcagagatacgcaccagattatgtaggagaaatcaccgtttct
accgtttctctaccgtcggatgacatgaagggaagaatcataggtagagaaggaagaaac
atcaggacatttgaaaagatcacgggtgtagacttgataatagacgacaccccggaagtg
gtggttctttcctgctttaaccctctgagaagagagatagcccgtatcacactggaaaaa
ctggtggcggatggaagaatacatcctgcaaggatcgaagaaatgtacgaaaaagcaaag
caggaagtggagaaagccataaaagaagctggacaggaggcgacgttcaaagcgggtgtt
atggggctccatccggagcttgtgaaactccttggaaaattgaaatacagaacgagctat
ggccaaaacgttctgaaccattcgatagaagtggctctgctcgccggttacatggcttct
gaacttgggctaaacgcggacaaagcgagaagaggaggactcctccacgatataggaaaa
gctgttgatcaggagctggaaggttcacacacgaccataggtgcagagcttgcccgaaga
tacggagaaaaagaagacatcataaacatgattctcagccatcacggagaagaagaaccc
atgacacctgaagcagtactcgtggcagctgctgatgctctctccgcggcaagaccaggt
gcgagaagagagagtctggaaaactacatcaagcgtcttatgaagctggaggaaatagca
aaaagtttcaaatacgttgaaaaagcctacgccattcaggctggaagagaaatcagggta
atcgtggaacccgacaaagtggatgacgctctcgctgaaaaactcgcctacgatatttct
aaaaagatagaagaagagctcgaatatcccggtgttctgaaagttgtggtgataagagag
aaaagaagtgtcgcttacgcgaagtaa
DBGET
integrated database retrieval system