Thermotoga sp. RQ7: TRQ7_06670
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Entry
TRQ7_06670 CDS
T03669
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thr
Thermotoga sp. RQ7
Pathway
thr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TRQ7_06670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thr03400
]
TRQ7_06670
Enzymes [BR:
thr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TRQ7_06670
DNA repair and recombination proteins [BR:
thr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TRQ7_06670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_22
SecA_DEAD
AAA_30
AAA_16
UB2H
AAA_25
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AJG41134
UniProt:
A0A0B5KRA6
LinkDB
All DBs
Position
complement(1285825..1288512)
Genome browser
AA seq
895 aa
AA seq
DB search
MVEILLVPNEREIHLEGYLFYPSRDNLPLEDVPLSPEVKKKRMKILWRLLKGENLKIVTT
LKALTEKIFSPESLKERTIEVRRSASFDLSPERFVEMGYERTFTVQMPGEFSIRGGILDI
FSPGYDFPVRIELFGEVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSSLLDFVKDVR
FTCENLEKALTEYRKIRKELKDLLKEKYDLFFDEGVLERVLKNVEKTSAGATVSSGIEER
SLPLVDIDEIEEGELVVHKEHGIAIFEGMIRLKSVLGERDYLKLKYEDAVLYVPVEKIDR
VHRYIGDPSQVKLDRLNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPEL
EEKFAETFPYIETPDQQKCIEEVLIDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSG
KQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIG
THALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMALSG
MKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVLENL
KRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDDAH
RYGLAQLYQLRGRVGRSDRRAFAYFLYPKGVPKSALERLRVLKAHTGPGSGLQIAMKDME
MRGIGDVLGLEQHGNIVSIGLKLYNEILRETVTKVKKKRVERKHTVQVEIENPPGRFFIP
EDYISNPVERLRMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLLLDYFRIRIRASKL
GIRKIRFDHFMVELLPGKNSPLLKHPGYNPRSGTVVLYKRGDPIEYLLKILKNEG
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaatacttctggttccaaatgaaagagagatacatctagaaggatatctcttc
tatccctcgagagacaacctgcctctcgaagatgttcctctatcacctgaagtgaaaaag
aagaggatgaagatcctctggaggcttctcaaaggtgaaaatctaaaaatcgtcaccacc
ctgaaagcccttaccgaaaagattttctcaccggaatctttgaaggaaagaaccatcgaa
gtcagacgttctgcttcgttcgatctttcccccgaaaggttcgtggaaatgggatacgaa
aggaccttcaccgttcaaatgccgggggagttctccatcagaggtggaatcctggacatc
ttctctccaggatacgactttcccgtgaggatagaactctttggagaagtcgtggaagac
atcagattcttcgatgtttccactcagagatctttccagaaagtcgacgaggtttatatt
ctaccctttctcgatgaatacggagacagttcactgctcgactttgtaaaggatgtacgt
ttcacctgtgagaatctggagaaagccctgacggaataccgaaagataagaaaagagttg
aaagacctattaaaggaaaaatacgatctgttcttcgatgaaggtgtcctggaaagagtt
ctgaaaaacgtggagaagacatccgccggtgcaaccgtctcttctggtatcgaggagaga
tcgcttcccctggtggacatcgacgaaatagaagagggagaactcgtcgttcacaaagaa
cacggaatcgccatcttcgaaggcatgatcagattgaagagtgttcttggagagcgggac
tatctaaaactgaagtacgaagatgcggttctttatgttccagttgaaaaaattgacagg
gtacacagatacataggtgacccatctcaggtaaaactcgacagattgaacaggggaaga
tggaagagaacgctgaaaaaagtacgggaagacatcgaaaaaagggtacgagaactcgtt
gaactttacctgaagagagaagaagtgagaggaacactacttcccggtgatcccgaactg
gaagaaaaattcgcggaaacctttccatacatagaaacccctgaccagcagaaatgcata
gaagaagttctgattgacctgtcatcggagaaacccatggacagactgttatgtggtgat
gctggagtgggcaaaacggaagtggcacttcgtgctgcctttcgcgctgtggtatccggg
aaacaggtggcagtacttgttcccaccactgtgcttgccagacagcactatgagaacttc
aaagaaagactcgagcctttcggtgttagagttgaacttctcgacagttccagaacgctg
cgggaaagaaaagagatactggaaggactgaaaaagggtgaaatagacgtcgtaatagga
acgcatgctcttttgaacgaaagagtggaattttcagatcttggactcgtcatcatcgac
gaggaacaaaagttcggtgttgaacagaaagaaaaattcaaaaaaatgaggctttctgtg
aacgttctctccctgagtgccacgccaattccacgaacgctccacatggcactctccggg
atgaaggacctttctgtgataaatgctcctccacctggaagaaaacccgtacacgtctat
atcgctgaatacaacgaagagctggtgaaaggagccgttgtgagagaggtaaacagagga
ggacaggtgatctacgtccacaacagggtggaagaacttccagaggtgctcgaaaacctg
aagaggatgtttccagaactcagaatagcaatggcacacggtaagatgtccaggagagtg
atggaaaaggtcgttcatgagttctacagtggaaacatcgacgttcttttgtgtacaacg
atcatcgaaaacggcgttgatataccgaacgccaacacgctgatcgtcgacgatgcccac
aggtacggtcttgcccagctctatcagctcaggggaagggtgggaaggagtgataggagg
gctttcgcgtactttctgtatccaaaaggggttccaaaaagtgctctggaaagactcagg
gtgctcaaggcacacacaggtccaggcagtggtctgcagattgccatgaaagacatggag
atgcggggtatcggagatgttctgggactggagcagcacggaaacatcgtctccattggt
ttgaaactgtacaacgaaatcctgagggaaactgtgacaaaggtgaagaaaaaacgggta
gagagaaagcacaccgttcaagttgagatagaaaatcctccaggcaggttcttcatacct
gaggattacatttcaaaccccgtggaaagactgagaatgtacagaagacttgcgtccgct
tctgaagagggggaaatagaagagatactggaagaaatgagggatcgattcggagagccg
ccagaagaggtgaaactgcttctggattacttcagaataagaataagagcatcaaaactg
ggtataagaaaaatcagattcgaccacttcatggtggaactccttccgggtaaaaattct
ccacttttgaaacatccagggtacaatccaagatccggtactgttgttctatacaaaagg
ggtgacccgatagagtatcttctgaagattttgaaaaatgaagggtga
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