Thermotoga sp. RQ7: TRQ7_07735
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Entry
TRQ7_07735 CDS
T03669
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thr
Thermotoga sp. RQ7
Pathway
thr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRQ7_07735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thr03019
]
TRQ7_07735
03016 Transfer RNA biogenesis [BR:
thr03016
]
TRQ7_07735
Enzymes [BR:
thr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TRQ7_07735
Messenger RNA biogenesis [BR:
thr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TRQ7_07735
Transfer RNA biogenesis [BR:
thr03016
]
Prokaryotic type
tRNA degradation factors
TRQ7_07735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
NusA_N
Transketolase_C
Ribosomal_L6
Motif
Other DBs
NCBI-ProteinID:
AJG41332
LinkDB
All DBs
Position
complement(1477879..1480002)
Genome browser
AA seq
707 aa
AA seq
DB search
MKEWRREILGRELVVQHGKVAKQSSGAVLVRFGDTAVLATANISDKVIEGIDFVPLTVEF
QERFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEIQVIVTVLSADPN
VPPDVVGIFAVSLALNVSKIPFEGIVAGIRIGYRDGQFIAFPTEEDIEKGLMDITVAGTK
DAVTMVEGEAKEVSEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPEPPEGLV
ETFNSLLDREELERRILVKAKKEREAALKEYEEKLLSQTAEALSIVDPEEIKPFVSELYE
EAVKKTMRRLIVEKGIRADGRKPNEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGA
PMDVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPE
EEFPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIRKHVAGIAMGLILEEDAEVIL
TDIIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDKMY
ETISAPRPHLSRYAPIIKVTKIDPDKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKV
VGNSEENVDNAIALIREIAKEIEVGEILEGKITRIEPYGLFIEVRPGKIGLLHQSKVGED
MRQFLKKVKVGDTIKVQVINIDDLGRLQFKRVKEESPQHGEVHNKRH
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagtggcgacgagagattctcggaagagaactcgtagtccaacatggaaaagtg
gcaaaacagtcaagtggagccgttctggtgagatttggagacacagctgttctggcaacg
gcgaacatttctgacaaggtgatcgagggaatcgattttgtccctctcaccgttgagttc
caggaaaggttctatgccgctggaaagatccccggtggttttatcaaaagagaggggaag
cccagtgaatctgccattctctcagcccgtctcatcgacaggccaataaggcctctcttt
ccaaaaaaattgagaaatgagattcaggtgatcgtgacggtgctttcagcggatccaaac
gttccacccgatgtagtgggcatctttgccgtatcactcgccctgaacgtctcgaagatt
ccgttcgaaggaatcgttgctggcatcagaataggctacagggatggtcagttcatagcc
ttccccacagaggaggacatcgaaaaaggtcttatggatatcaccgtcgcgggaacgaag
gatgccgtgaccatggttgaaggtgaagccaaagaggtctcagaagaggatatggtaaag
gctttgagatttgcacactccgttataaaagagctcgtcgatttccaggaagagatactt
tcggagttcaacgtcgagaagatccccgttgttgaaccagaaccaccagaaggactggtt
gaaacattcaacagccttctggacagagaagaactcgaaagaagaattcttgtgaaagca
aaaaaagaaagagaggctgctctcaaagagtacgaggaaaaactcctcagtcagacagca
gaagcactttccatcgttgatcccgaggagataaaaccctttgtttccgaactctacgaa
gaagccgttaaaaagacgatgagacgcctgatcgttgagaagggaatcagagcagatgga
aggaaaccaaacgaaatcaggcctatctcctgcgaagtgggactttttccaaggacacac
ggatctgcactcttcacaaggggagaaacgcagagtcttggaatcgtaacgcttggagct
cccatggacgttcagatcatagacacactccttgaagaaggcgtaaaaaggttcatgctt
cactacaacttcccacccttctgtaccggtgaagtgaagcctctgagaggaccgagcaga
agggaaatcgggcatgggcacctggcagaaagggccctgaagaacatgttgccacccgag
gaggagttcccctacaccataagggtggtttctgaaatcctcgaatcgaacggttcctca
tccatggcaacggtgtgttctggatcccttgcattgatggacgcaggagttcctatcaga
aaacacgttgccggaatagccatgggactcatcctcgaagaagatgcagaagtcatactc
accgacatcatcggaatggaagatcactacggtgatatggacttcaaagtggcaggaaca
agagacggaatcaccgccttccagatggactgtaaggtttccggtgtttccgatgaacta
ctcatgaaagcgctcatgcaggcaagagaggccagaatgtacatcctcgataagatgtac
gaaacgatctctgccccaagaccacacctgtccaggtacgcacccatcataaaggtgacg
aagatcgatccagataaagtggcagacgtcataggccccggtggaagggtcataaagaag
atcataaaagatttcgacgtgaaagtggaaatcgacgatgaaacaggtcttgtcaaggtg
gttggaaactccgaggaaaacgttgacaatgcaatagcactcataagggaaatcgccaaa
gaaatagaagtgggagagatcctcgaaggaaagatcacgaggatagaaccttatggactg
ttcatagaggtaaggcccggaaagatcggcttgctccatcaaagcaaggttggagaggat
atgagacagttcttgaaaaaggtgaaggtcggtgatacgataaaggtacaggttataaac
atagacgatcttggaaggcttcagttcaagcgtgtgaaggaggaaagtccccagcatgga
gaagtgcacaataaacgacattga
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