Thermococcus paralvinellae: TES1_0256
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Entry
TES1_0256 CDS
T03005
Name
(GenBank) exosome complex RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
ths
Thermococcus paralvinellae
Pathway
ths03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ths00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TES1_0256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ths03019
]
TES1_0256
Messenger RNA biogenesis [BR:
ths03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TES1_0256
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TES1_0256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
KH_1
ECR1_N
RRP40_S1
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AHF79651
UniProt:
W0I0S7
LinkDB
All DBs
Position
240546..241313
Genome browser
AA seq
255 aa
AA seq
DB search
MRRVFVQNRELVVPGTLLAQGPFKNGRGTFKEGNRIYSTVVGLVDIRNDFIRVIPLEGPY
IPEVGDNVIGKIIDVKFSSWTVDIGAPYQATLRIQDAVEEKIDLLKTDLRKIFDIGDIIY
AKVKAFNEVNQIDLTTKGMPFNGGPLKGGQIVKITPSKVPRLIGKGGSMINLIKKMTQTR
IIVGQNGWVWVSGRKEELERVAIEAILKVDRESHTQGLTDRVKELLLTRLKELKDQGIIE
EIPQIEEGEENDGKA
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgagaagggtttttgtacaaaatagggaattagtggttccaggaacgctattggcacag
ggaccgttcaagaacggcagagggacttttaaagaggggaacagaatctactcaacagtt
gttggactcgtggacataagaaatgacttcataagggttattccccttgaagggccatac
attccagaagtcggagacaatgttataggaaagataattgatgttaagttttcaagctgg
actgtagacatcggagcaccttatcaagcaacactaagaatacaggatgctgttgaagag
aaaattgatctcttgaagacagatttaaggaaaatattcgatattggagacataatttat
gcgaaagtgaaagctttcaatgaagtgaaccaaattgacctaacaactaagggaatgccc
tttaacggcggtccattaaagggtggacagattgtaaaaataaccccatctaaagtgccc
cgtttgattggtaagggcggttctatgataaatctaatcaaaaaaatgacccagacaagg
attattgttggacaaaacggatgggtatgggtcagcggaagaaaagaggagcttgagaga
gtagcaattgaagcaatactgaaagttgatagagaaagccatacacaagggctgactgat
agagtaaaagagctgcttttgacaagattgaaagagctcaaagaccagggaattattgag
gaaataccccaaatagaagagggtgaagaaaatgatgggaaagcctga
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