Thalassotalea sp. HSM 43: E2K93_01165
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Entry
E2K93_01165 CDS
T05926
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tht
Thalassotalea sp. HSM 43
Brite
KEGG Orthology (KO) [BR:
tht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tht03016
]
E2K93_01165 (rnd)
Enzymes [BR:
tht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E2K93_01165 (rnd)
Transfer RNA biogenesis [BR:
tht03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E2K93_01165 (rnd)
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
DUF5945
Methyltransf_14
Motif
Other DBs
NCBI-ProteinID:
QBY03061
UniProt:
A0A4P7JIB7
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All DBs
Position
complement(256993..258123)
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AA seq
376 aa
AA seq
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MVQFSYISDENELVQYCQQASSKDLVCIDTEFVRTRTLFPNLGLLQIYDGEQLALIDPEA
IADLSPFWQLLQNPDVLKVIHSCSEDLEVFLRAGQCRPVNMLDSQIAMAFLGHGLSMGYA
AMIKHYLGLELDKSESRTDWLKRPLSQRQLEYAAADVYHLYQICDRVIDEINEAGFYQAL
MMESEWQIEKKFSPIDPLKLYLDNKSAWKLQPRNLAILQHLLAWRYEQAVRRNLPLTFVA
KDATLFTLAYKNPKSVGAMANFEGIDILDIRHKGKAMLNVMRKVNELPDDELPKQMSRLD
SYPNYKNTFKAVKQKLTELAAQNNLDIAVVAGKRQIHQLLTWHWQLNEQSEQSVELLQGW
RGELFAQPVRDFLQSL
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
attgtgcagttttcttacattagcgacgaaaatgaactcgtccaatattgccaacaggca
tccagcaaagacctggtatgtattgataccgagtttgttcgcacccgtaccttatttcca
aatcttggcttattgcaaatctatgatggtgagcaacttgccctgattgatccggaagcg
attgctgatttgtcgcctttttggcagttattgcaaaaccctgatgtattgaaagtgatt
cattcatgctctgaagacttagaagttttcttaagagcggggcagtgtcgcccggtcaat
atgctcgactcgcaaatagcgatggcatttcttggtcatggtttgtcgatgggatatgcg
gcgatgatcaagcattatcttggtttggaattagataaaagtgaatcgcgaaccgattgg
cttaaacgcccgttaagtcagcgtcagttagaatacgccgcagccgacgtttatcatctc
taccaaatttgtgatcgtgtgatagacgaaatcaacgaagctggtttttatcaagcttta
atgatggaaagcgaatggcaaatcgagaagaaatttagcccaatcgacccgctgaaactg
tatttagataacaaatccgcgtggaaacttcagccgcgtaacctggcgattttgcagcat
ctattggcttggcgttatgaacaggcggtgcgtcgtaatttgccgctcacctttgttgca
aaagacgctactttgttcacattggcatataaaaacccgaaaagcgttggcgcgatggca
aactttgaaggaattgatattctcgatatccgccacaaaggcaaggccatgcttaatgtg
atgcgcaaagttaatgagttgccagatgacgagctgccaaagcaaatgtctcgcttagac
agttaccctaattacaaaaacacctttaaagcggtaaagcaaaaactcacagaactggcg
gcgcagaataaccttgatatcgccgttgttgccggtaagcgtcaaatacatcaattgctt
acttggcactggcagctgaacgagcaaagcgaacaaagtgttgagctgttgcaaggctgg
cgcggcgagttgtttgctcaaccagtacgtgactttttacaatctctataa
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