Thalassotalea sp. HSM 43: E2K93_12090
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Entry
E2K93_12090 CDS
T05926
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tht
Thalassotalea sp. HSM 43
Brite
KEGG Orthology (KO) [BR:
tht00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tht03009
]
E2K93_12090 (rlmD)
Enzymes [BR:
tht01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
E2K93_12090 (rlmD)
Ribosome biogenesis [BR:
tht03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
E2K93_12090 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
DOT1
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_15
PCMT
Methyltransf_12
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QBY05083
UniProt:
A0A4V1BS64
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All DBs
Position
2793363..2794700
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AA seq
445 aa
AA seq
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MVKIYKPKNAKALDKQTLQLTIERLDINGDGVARHQGKPVFVSNALPLEVVEAKVIEQKS
KYLRADSKKILTSNAQRVSPECRHFYQCGGCNLQHLEYQAQLDFKQQKVSELFRRNTKLE
QLPWQAPLVAKPWHYRRKARIGVQYDRQGQVTLGFRKKQSNVLTPIKQCLVLPQDVSDVF
VPLQQVLQKISPSKAIGHCEFIAADRNVLVLRTLKKLPAKSIALLSEFGQQQQLQIILQD
EQGISTLDGEDVADLWFQMHGCQLSFSHNDFLQVHGELNATMVQQAISWLALEQDDRVVD
LFCGFGNFSVPMAKQCQQLVGVEGVDSMVERAQKNAEANDLRHCDFFQADLNDENVPWPW
LEQYPVGHFNKLLLDPARAGAPGAIKRIVSMAPELIVYVSCDAATMSRDSDELLNNGYRL
EKIALMDMFAQTRHVETMALFVKNK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaatttataaaccgaaaaacgccaaggcccttgataagcaaactctgcagctg
acaatcgagcggcttgatatcaatggcgatggtgttgcccgtcatcagggaaagcctgta
ttcgtcagtaatgctttgcccttagaagtggttgaggcgaaggttattgagcaaaaatcg
aaatacctcagagctgacagtaaaaaaatactcacctcaaatgcacagcgggttagccct
gaatgtcgccacttttatcaatgtggtggctgtaatttgcagcatctcgagtaccaagcg
cagcttgattttaaacaacaaaaagtaagcgagctatttcgtcgtaataccaagcttgag
caattgccttggcaagcaccgttagttgccaagccgtggcattatcgccgcaaagcgcga
attggtgtgcaatatgatcgacaaggccaagtaaccttaggctttcgtaaaaaacaatcg
aatgtattaacgccaatcaagcagtgtttggtattgccccaagacgtcagtgatgttttt
gtgccgttgcaacaggtattgcaaaaaataagcccatccaaagccattggtcattgtgag
tttatcgctgccgatcgtaatgtcttggtattgcgtacattaaaaaaattgccagcgaaa
tccatcgccttgttatcggaattcggccaacagcagcagctgcaaattattttgcaagat
gagcaaggcatcagcaccctcgatggcgaggatgtggctgatttgtggtttcaaatgcac
ggttgccaattgtctttttcgcataacgattttttacaggtgcatggcgaactaaatgcg
acaatggtgcagcaagccatcagctggttagcacttgagcaagacgatcgggtggttgat
ttgttctgtggatttggtaatttcagtgtgccgatggcaaaacaatgccagcagttagtg
ggcgttgaaggtgtcgacagcatggttgagcgggctcaaaaaaatgccgaggccaatgat
ttgcgccattgtgatttttttcaggcagaccttaacgatgaaaacgtgccgtggccgtgg
cttgagcaataccctgtcgggcattttaataagttgctacttgatcccgcgcgagccggt
gcacctggggcaataaaacgaatcgtcagcatggcgccagagctgattgtttatgtttca
tgcgatgccgcgaccatgagtcgtgacagcgacgaattacttaacaatggctatcgcctc
gagaaaattgcgcttatggatatgtttgcgcaaacccgtcatgtcgaaaccatggcgtta
tttgtaaagaataaatag
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