Thalassotalea sp. HSM 43: E2K93_12285
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Entry
E2K93_12285 CDS
T05926
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tht
Thalassotalea sp. HSM 43
Pathway
tht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2K93_12285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tht03019
]
E2K93_12285
Enzymes [BR:
tht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E2K93_12285
Messenger RNA biogenesis [BR:
tht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E2K93_12285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QBY05112
LinkDB
All DBs
Position
complement(2840406..2841833)
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AA seq
475 aa
AA seq
DB search
MSFETLGLSPQILSALQDKGYTTPSPIQEKAIPAVLSGQDVMAAAQTGTGKTAGFTLPIL
QTLDNGKQVKPNHIRTLILTPTRELAAQVGDNVATYSKNLNLSSFIIYGGVKINPQMMRL
RKGIDILVATPGRLLDLYQQNAVKFSQVEVLVLDEADRMLDMGFINDIEKIIRLLPKKRQ
NLLFSATFSDDIRALARGLVKDPVEISVSPANTTATTVEQKIVTTDKKKKPRLLSYLIGH
NNWQQVLVFTKTKHGANRLTRHLEEDGIKALAIHGNKSQGARTKALAQFKDGGIRVLVAT
DIAARGIDINELEQVVNFDLPHVAEDYVHRIGRTGRAGKDGNAISLVCSDEYKQLVAIER
LTQKLLEREEVAGFEAANPVPKSHDIRPFKDKKPKKPKKPKAEHHDGQKSSDNARGHKPV
GKNKRHTSKDNPYAKNTSGKARRRPAKSSNQKSSSSNSSKQKSTGQGRGGSRVAG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaactctaggcttaagcccacaaattttatctgcactacaagataagggt
tacaccaccccatcgcctattcaagaaaaagccattccagcggtattatctggacaggac
gttatggcggccgcgcaaaccggtaccggcaaaaccgcaggttttaccctaccgatattg
caaactctagataatggtaagcaagtcaaaccaaatcacattagaaccttgattctaacc
ccgacccgagagcttgcagcacaggtcggtgataatgttgcgacctattcaaagaatctc
aatctcagcagctttatcatttacggtggcgttaaaatcaatccgcaaatgatgcgtcta
agaaagggtatagacattttggttgccacccctggacgtttactggatttgtatcaacaa
aacgcagtgaagtttagccaggttgaagtcttggtgttggatgaagcggatcgtatgctg
gacatgggctttatcaatgatattgaaaaaattattagactattgccgaagaaacgacag
aacttattattctctgcgacattctccgatgatatacgtgcattagccagaggcttggtt
aaagatccggtggaaatttccgttagtccggccaataccaccgctaccaccgtagaacaa
aagattgtcaccaccgataagaagaagaagccgcgcttattatcttatttaattggtcat
aataactggcaacaagtgttggtattcacgaaaaccaaacacggtgccaatcgcttaacc
cgtcacttagaagaagatggtatcaaagcgttagccattcacggcaacaaaagccaaggt
gcgcgcaccaaagcgttagcgcaatttaaagatggcgggatccgcgtcttggttgccacc
gatatcgcagctcgtggcatagacatcaatgaattagagcaagtggtgaactttgatttg
ccgcatgttgctgaagattacgtacatcgtattggtcgtaccggtcgagcgggtaaagac
ggtaacgccatctcattggtgtgctctgatgagtacaaacaattggttgccattgaacga
ctcacgcaaaagctgttagaacgtgaagaagtggcaggctttgaagcggctaacccggtt
cctaagtcgcacgacatcagaccgtttaaagataaaaaaccaaagaaaccgaaaaagcca
aaagcagaacaccatgacgggcaaaaaagttctgacaatgcgcgtgggcataagccggtc
ggtaagaataaacgccataccagtaaagataacccttacgcgaaaaacaccagcggtaaa
gcgagacgtcgtccggcaaaatcatcaaaccaaaagtcgtctagttcgaactcatctaag
caaaaatcgactggtcaaggccgaggcggaagtcgcgtcgcaggataa
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