Thauera humireducens SgZ-1: AC731_004470
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Entry
AC731_004470 CDS
T04211
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thu
Thauera humireducens SgZ-1
Pathway
thu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AC731_004470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thu03400
]
AC731_004470
Enzymes [BR:
thu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AC731_004470
DNA repair and recombination proteins [BR:
thu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AC731_004470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
AAA_30
AAA_16
CTE_SPB4
Glyco_tran_WecG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMO36254
UniProt:
A0A127K3S5
LinkDB
All DBs
Position
complement(957357..960854)
Genome browser
AA seq
1165 aa
AA seq
DB search
MPATTAGLLPSLPSRPMPNPLDSLLAKLATSTLPKPGARLELPPLAGSADALAVAQLASR
GRMLLVITANPLDAQRLQEEIAWASPGLRVHLLPDWETLPYDNFSPHQDLISERLSSLYA
ITRGETDVLLVPASTALYRMAPPSYLAAYTFFLKQGEKLDVEQFKAQMALAGYAHVTQVV
SPGEFSVRGGLVDLFPMGSPLPFRIDLFDDEVESIKTFDPDTQRSVYPTKEIRLLPAREF
PLDDKGRTRFRSRFRETFEGDPTRAAIYKDVSNGIAPAGVEYYLPLFFDDTATLLDYLPA
DTAVLLHRDVPAAIAEFWKDTRSRHDLLKGDRTRPVLPPEQLFLTDEAFFIALKSLPRLA
LGAEANATATDALALPPPDVAVERKATDPLHKLKVFLDAFDGRVLLLSDSPGRRETMAEF
FAEYGLKPEASADFGAFMDSDARLALGVAPLARGFVLPAAKLAVFTETELYAATARTRAR
RDARKAATMEGWLRDLSELKVGDPVVHVSHGIGRYLGLIHMNLGEGDTEFLHLEYNGGDK
LYVPVSQLHVITRYAGADPEAVDLHRLGSGQWEKAKKKAAMQVRDTAAELLALYAQRAAR
AGHRFDFKQHDLEAFAEGFGFETTPDQQAAIDAVVSDMKSGRPMDRLVCGDVGFGKTEVA
LRAAFIAVADGKQVVVLCPTTLLAEQHYQTFADRFADWPIKIAELSRFKSAKEQAEALQL
LSEGKVDIIIGTHRLLQKDVMFKRLGLVIIDEEHRFGVRQKEALKQLRSEVDILTLTATP
IPRTLGLAMEGLREFSVIATPPQKRLSIKTFVQPSSRGVIREAVLREFKRGGQVYFLHNE
VDTIDNMRNDLEELLPEARIVVGHGQLPERELERVMRDFTQQRANLLLCTTIIETGINIP
TANTIIINRADRFGLAQLHQLRGRVGRSHHQAYAYLLTMPGAKPTAQAQKRLEAIAMMED
LGSGFYLAMHDLEIRGAGEVLGENQSGEIQQVGFSLYTEMLKRAVKDLQAGKEPDLSQPL
EVVSEINLHAPALLPTDYCPDVQERLTLYKRLANCDTEDDLRALQEELIDRFGEVPPQTA
ALIETHRLRMLVKDYGVQKLDASDAQISVQFAKDAPIDPVKVIFLIQKDRSTKMAGPEKL
VRRASLPNLKDRVKAVKDLLDAVKA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgccggccacgaccgccggattgttgccgagtcttccgtcacgccccatgcccaatccc
ctcgattccctgctcgcaaaactcgccaccagcaccctgcccaaacccggcgcgcggctc
gagctgccgcccctcgcagggtccgccgatgcgctcgccgtcgcccagcttgccagccgt
ggccgtatgctgctcgtgatcacggccaatccgctggatgcgcagcgcctgcaggaagag
atcgcctgggcctcgcccggactgcgggtccacctgctaccggattgggagaccctgccc
tacgacaacttctcgccgcatcaggatctgatctccgagcgtctgtcctcgctgtacgcc
atcacccgcggcgagacggacgtgctgctggtgcctgcgtccaccgcgctgtaccgcatg
gcgccgccctcgtatctggccgcctacaccttcttcctcaagcagggcgagaagctcgac
gtcgagcagttcaaggcgcagatggcgctggcgggctatgcgcacgtcacccaggtggtg
agcccgggcgaattctcggtgcgcggcggcctggtcgacctgttcccgatgggctcgccg
ctacccttccgtatcgacctcttcgatgacgaggtcgagagcatcaagaccttcgacccc
gacacccagcgctcggtctatccgaccaaggaaatccgtttgctgccggcgcgcgagttc
ccgctcgacgacaaggggcgcacgcgcttccgcagccgcttccgcgagaccttcgagggc
gatccgacgcgtgcggcgatctacaaggacgtctccaacggcatcgccccggccggcgtc
gagtactacctgccgctgttcttcgacgacaccgccaccctgctcgattacctgccggcc
gacacggcagtgctgctgcaccgcgacgtgccggctgcgatcgcggagttctggaaggac
acacgctcccgccatgatctgttgaagggcgaccgtacgcgaccggtgctgccgcccgaa
cagcttttcctgaccgacgaggccttcttcattgcgttgaagagcttgccgcgtctggcg
ctcggtgccgaagccaatgccactgcgaccgatgcgctcgccttgccgccgcctgacgtc
gccgtcgagcgcaaggcgactgacccgctgcacaagctgaaggttttcctcgacgccttt
gacggccgcgtgctgctgctgtcggactcgcccggccggcgcgagaccatggccgagttc
ttcgccgagtatgggctcaagcccgaggccagcgccgacttcggcgccttcatggattcc
gatgcacgcctcgcgcttggcgtcgccccgctcgcgcgcggcttcgtgctgcccgcggcg
aagctcgcggtcttcaccgagactgagctctacgccgccaccgcccgcacccgtgcccgc
cgcgacgcgcgcaaggcagccaccatggaaggctggctgcgcgacctgtcggagttgaag
gtcggcgatccggtggtgcatgtgtcgcatggcattggccgctacctgggcctcatccac
atgaacctcggcgagggcgacaccgagttcctgcacctggagtacaacggcggcgacaag
ctctacgtgccggtttcgcaactgcacgtgatcacccgctacgccggcgccgatcccgag
gcggtcgacctgcaccgcctcggctcaggccagtgggagaaggccaagaagaaggccgcg
atgcaggtgcgcgacacggccgccgagttgctcgccctctacgcccagcgcgcggcgcgc
gcaggccatcgcttcgacttcaagcagcacgatctggaagcctttgccgagggattcggc
ttcgaaaccacgcccgaccagcaggcagccatcgacgccgtggtcagcgacatgaagtcg
ggtcggccgatggaccgcctggtgtgcggcgacgtcggctttggcaagaccgaggtcgcc
ctgcgcgccgcgttcatcgcggtcgcggacggcaagcaggtggtggtgctgtgcccgacc
accctgctcgccgagcagcactaccagacgttcgccgaccgcttcgccgactggccgatc
aagatcgccgaactgtcgcgcttcaagtcggccaaggaacaggcggaggcgctgcagctg
ctgtccgaaggcaaggtggacatcatcatcggcacccatcgcctgctgcagaaagacgtg
atgttcaagcgcctcggcctggtgatcatcgacgaggaacaccgcttcggcgtacgccag
aaggaagcgctcaagcagctgcgttccgaggtcgacatcctcacgctgaccgccacgccc
atcccgcgcacgctgggtctggcgatggaaggcctgcgcgagttctccgtgatcgccacg
ccaccgcagaagcgcctgtcgatcaagactttcgtgcagccttcaagccgcggcgtgatc
cgcgaggcggtcctgcgcgagttcaagcgcggcggccaggtgtacttcctgcacaacgag
gtcgacaccatcgacaacatgcgtaacgacctcgaggagctgctaccggaggcgcgcatc
gtggtcggccacggccaactgcccgagcgcgagctcgagcgcgtgatgcgcgacttcacc
cagcagcgcgccaacctgctgttgtgcaccacgatcatcgagaccggcatcaacattccg
accgccaacaccatcatcatcaaccgcgccgaccgcttcggcctcgcacagctgcaccag
ttgcgcggtcgcgtcggccgcagccaccatcaggcctacgcctacctgctgaccatgccg
ggcgccaagcccaccgcacaggcgcagaagaggctcgaggccatcgcgatgatggaagac
ctcggctccggcttctacctggcgatgcacgacctcgagatccgcggcgccggcgaggtg
ctgggcgagaaccagtcgggcgagatccagcaggtcggcttcagcctctataccgaaatg
ctgaaacgcgcggtcaaggatctgcaggccggcaaggagcccgacctgtcgcaaccgctg
gaggtggtgtccgagatcaacctccacgccccggcgctgcttcccacggactactgcccc
gacgtgcaggagcgcctgaccctctacaagcgcctcgcgaactgcgacaccgaagacgat
ctgcgtgcgctgcaggaggaactcatcgaccgtttcggcgaagtgccgccgcagaccgcc
gcgctgatcgagacccaccgcctgcgcatgctggtgaaggactacggcgtgcagaagctc
gacgcctcggatgcgcagatcagcgtgcagttcgccaaggacgcgccgatcgacccggtg
aaggtgatcttcctgatccagaaggaccgcagcacgaagatggcgggcccggagaagctg
gtgcgccgcgccagcctgcccaacctcaaggaccgggtaaaggcggtgaaggacctgctc
gacgcggtgaaggcctga
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