Thauera humireducens SgZ-1: AC731_019145
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Entry
AC731_019145 CDS
T04211
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thu
Thauera humireducens SgZ-1
Pathway
thu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC731_019145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thu03019
]
AC731_019145
Enzymes [BR:
thu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AC731_019145
Messenger RNA biogenesis [BR:
thu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AC731_019145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AMO38872
UniProt:
A0A127KAB5
LinkDB
All DBs
Position
complement(4122502..4123959)
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AA seq
485 aa
AA seq
DB search
MSFADLGLIPELLKAVADAGYTEPTPIQRQAIPTVIAGHDVMGGAQTGTGKTAGFTLPLL
HRIARHANTSTSPARHATRALILAPTRELAMQVYESVKTYSKHLPLRSICVYGGVDIKPQ
QAELRRGIEVVIATPGRLLDHVEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLP
ANRQSLLFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAH
LLRHQPDTQALVFVDTKLACGRLAHFLERHGISADAIHGDKGQQQRTETLEAFKSGKLRV
LVATDVAARGIDIDELPYVINFELPHTAEDYVHRIGRTGRAGHQGNAVSLVCAEEKHRLA
EIQKLIKLEIPQEVVPGFDPEPEFFEAGSRSRSRRPASTPAEESPRTPRASSGRAPGPVG
TRPSRHKSPIAADGFDFSKPYEPTAATGSPPPPELQPTLAAQGKPDPLRRPQRPIAVLLG
GLGRK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgccgatctcggcctcatacccgaacttctcaaggccgtcgccgacgccggt
tataccgagccgacgccgatccagcgccaggccatccccaccgtcattgccggccacgat
gtcatgggcggcgcccagacgggcacgggcaagacggccggtttcaccctgccgctgctg
caccgcatcgcccgccacgccaacaccagcacctcgccggcacgccacgccacgcgcgca
ttgatcctcgcgcccacgcgcgagctggcgatgcaggtctacgagtcagtcaagacctac
agcaagcatctgccgctgcgctcgatctgcgtctatggcggggtcgacatcaagccccag
caggccgagctgcgccgcggcatcgaggtggtcatcgccacaccgggccgcctgctggat
cacgtcgaacagaaatcgatcaacctgtcccaggtcgaagtgctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcattcccgacatcaagcgcatcctcgccttgctgccg
gccaatcgccagagcctgctgttctcggccaccttctccgacgagatcaagaaactcgcc
gaccagatgctgaagaacccgcagctgatcgaggtcgctcgccgcaacatggtgtcggag
acgatcacccaccgcgtgcatccggtgtcatcaggtatgaagcgcaacctgctggcgcat
ctcctgcgccaccagcccgacacccaggcgctggtattcgtcgacaccaagctcgcctgt
ggccggcttgcgcacttcctcgaacgccacggcatctccgccgacgccatccacggcgac
aaggggcagcaacaacgcaccgaaacactcgaggctttcaagagcggcaagctgcgcgta
ctggtcgccaccgacgtggcggcacgcggtatcgacatcgacgaactgccgtatgtgatc
aacttcgagctgccgcacacggccgaagactatgtgcaccgcatcggccgtaccggccgg
gccggccatcagggcaacgcggtgtcgctcgtgtgcgcggaagaaaagcaccgcctcgcc
gagatccagaagctgatcaagctcgagattccacaggaagtcgtgcccggcttcgacccc
gagccggagttcttcgaggcgggcagccgctcgcgttcccggcggccggcctccaccccg
gccgaggagtcgccccgtacgccgcgcgccagcagcgggcgtgcgccgggcccggtcggc
acgcgcccctcgcggcataagtcgcccatcgcggcggacggcttcgacttcagcaagccc
tacgaacccacagcggcaacgggttcgccccctccacccgagctccagcccacgctggca
gcgcagggcaaacccgatccactgcgccgcccgcaacgccccattgcggtgttgcttgga
ggcctgggccggaaatag
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