Thermoflexus hugenholtzii: KNN16_01935
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Entry
KNN16_01935 CDS
T07254
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
thug
Thermoflexus hugenholtzii
Pathway
thug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
KNN16_01935
09124 Replication and repair
03420 Nucleotide excision repair
KNN16_01935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thug03021
]
KNN16_01935
03400 DNA repair and recombination proteins [BR:
thug03400
]
KNN16_01935
Enzymes [BR:
thug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KNN16_01935
Transcription machinery [BR:
thug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
KNN16_01935
DNA repair and recombination proteins [BR:
thug03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
KNN16_01935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
QWK11049
LinkDB
All DBs
Position
403562..405358
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AA seq
598 aa
AA seq
DB search
MALRPEFPLTIQADRTVWLETRHPGYEPARDALARFADLERSAGPIHVYRITPLSIWNAA
ALGLTAAEILEDLERFSGGQVPEGLREDIRTWMARYGRLRLEMGNGRLWLVADDPALLAW
VRAQSVVAPFLAPSGEAEADRVAVEPRARGALKQALLYLGYPVEDMAGYVEGARLDLRLR
STSRTTGEPFRLRPYQEEAVEAFLRAGSGVILLPCGAGKTIVGLGVMARLRTATLIIATS
TVAARQWITEILDKTDLSPDQVGEYTGHRKQIRPVTVATYQILTHRPHRDFEEDLLRQFP
HFRLFSALDWGLIIYDEVHLLPAPVFRITAQLQARRRLGLTATLVREDGLEREVFALIGP
KRYEAPWRELEARGWIAAAECHEIRVPMAPEDRLRYVAAAEKERYRLAATNPAKEPVIRQ
LLARHEEDTVLIIGQYLDQLERIARAIHAPLITGRTPVTERERLFDQLRRGEIRRLVVSR
VGNFAIDLPDANVLIQVSGTFGSRQEEAQRLGRILRPKRNGILAHFYTLVTRDTVDQDYA
ARRQLFLVEQGYRYEILEAEELSHYHPAVVDVAAWPRALPPQMSAGNGSSPDGSGSSA
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcgctccggccggagttccctctgacgatccaggccgaccggacggtctggctggag
acccggcatcccgggtatgagccggcccgggacgccctggcccgtttcgccgacctggag
cggagcgccgggccgatccacgtctaccgcatcacccccctttcgatctggaacgccgcc
gccctgggcctcaccgctgcggagatcctggaggacctcgaacgcttcagcggcggccag
gtccccgagggcttgcgggaggacatccggacctggatggcccgctacggccggctccgc
ctggagatgggaaacgggcggctctggctggtggccgacgatcccgccttgctggcctgg
gtgcgggcccaatccgtggtggcccccttcctggccccctccggggaggcggaggcggac
cgggtggcggtggagccccgggcccgcggcgccctcaagcaggccctcctctacctgggc
tatccggtggaggatatggccggatacgtggagggcgcccgcctggacctccggttgcgg
tccacgtcccggaccaccggcgagcccttccgcctgcgcccctatcaggaggaggccgtg
gaggctttcctccgggccggcagcggggtgatcctgctcccctgcggggcgggcaaaacc
atcgtgggcctgggggtcatggcccggctgcgcaccgccaccctgatcatcgccaccagc
acggtggccgcccgccagtggatcacagagatcctggacaaaacggatttgagccccgat
caggtcggggaatacaccggccatcgcaagcagatccgtccggtcacggtggcgacttac
cagatcctcacccatcgcccccatcgggatttcgaagaggacctcctccgccagttcccg
catttccgcctcttcagcgccctggactgggggttgatcatctacgatgaggtgcatctc
ctgccggccccggtcttccgcatcaccgcccagctccaggcccgtcggcgcctgggtctg
acggccaccctggtgcgggaggatgggctggagcgggaggtgttcgccctcatcggcccc
aagcgctacgaggccccctggcgggagctggaggcccggggctggatcgctgcggccgag
tgccacgagatccgcgtcccgatggccccggaggatcgcctgcgatatgtggccgcggcg
gaaaaggagcgctaccgcctggcggccaccaacccggccaaggagccggtgatccgccag
ctcctcgcccggcacgaggaggacaccgtcctcatcatcgggcagtatctggatcagctg
gagcgcatcgcccgcgccatccacgcccccctgatcaccggtcggacgccggtgacggag
cgggagcggctcttcgatcagctccgccgcggggagatccgccgcctggtggtctcccgc
gtgggcaatttcgccatcgacctccccgacgccaacgtgctgatccaggtctccggcacc
ttcggctcgcgccaggaggaagcccagcgattgggacggatcctgcggcccaagcggaat
gggatcctggcccacttctacaccctggtcacccgcgacacggtggatcaggactacgcc
gcccggcgccagctgttcttggtcgaacaggggtatcgctacgagatcctggaggccgag
gagctctcgcattaccacccggccgtggtcgatgtcgccgcctggcctcgggccctcccc
ccgcagatgtccgccgggaacggatcctcccccgatggatctggatcgtctgcttga
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