Thermoflexus hugenholtzii: KNN16_03005
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Entry
KNN16_03005 CDS
T07254
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
thug
Thermoflexus hugenholtzii
Pathway
thug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KNN16_03005 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thug03400
]
KNN16_03005 (uvrB)
DNA repair and recombination proteins [BR:
thug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KNN16_03005 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KNN16_03005 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_16
HH_RND_rel
AAA_30
AAA_25
AAA_19
AAA_22
AAA_5
TetR_C_20
Motif
Other DBs
NCBI-ProteinID:
QWK11255
LinkDB
All DBs
Position
complement(634504..636618)
Genome browser
AA seq
704 aa
AA seq
DB search
MTRFELVAPFEPTGDQPQAIEKLVEGLRRGYRYQTLLGATGTGKTFTIAHVIARVQKPTL
VISHNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYIPQTDTYIEKETSINEEIER
LRLAATQALFTRRDVIIVASVSCIYGIGNPHDWGQVVIRLQRGQVRRRDNLLRHLVDIQY
TRNDIDFRRGTFRVRGDTVDVFPAYQDTAIRIEFWGDEIDRLVEFDPLTGEVLRLHEAVE
IYPAKHFVTPEEKLRRAIASIEQELHQRLEELRAQGKLLEAERLRQRTLYDLEMLREVGY
CHGIENYSRHLDGRAPGEPPWTLLDYFPDDFLVVIDESHMTIPQLRGMYHGDRSRKETLV
EYGFRLPSALDNRPLTFEEFEQRVRQVIFMSATPGPYELEKSEQVVEQLIRPTGILDPIV
EVRPTKGQIEDLIGEIRRRVARGERALVTTLTKRLAEELSDYLNEMGIRTHYLHADIDTL
ERVEILRDLRLGVYDVVVGINLLREGLDLPEVSLVAVLDADQEGFLRSETALIQTIGRAA
RHVNGTAILYADRITESMRRAIEETNRRRAIQEAYNRAHGIEPRSIVKAVRDLTDRVREM
VAEEAGTAGRPPAMPKEELQRLIRALEKEMKRAAQALEFEKAAALRDQIFELREQLRVIE
LAETPPEARIRRLVEMEQPEEEPDSETPVAPAPPGRRNRPRRKG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacacgctttgagctggtggcgcctttcgagcccacaggggatcagccgcaggccatc
gagaagctggtggagggcctgcgccggggctatcgctaccagacgttgttgggggccacg
ggcaccggcaagaccttcaccatcgcccacgtcatcgcccgggttcagaagcccaccctg
gtcatcagccacaacaaaaccctggccgcccagctctacgccgagttccgggagttcttc
ccccgcaacgcggtggagtatttcgtcagctactacgattactaccagccggaggcctac
atcccccagacggacacctacatcgagaaggagaccagcatcaacgaggagattgagcgg
ctgcgcctggcggccacccaggccctcttcacccggcgcgatgtgatcatcgtggcctcc
gtatcctgcatctacggcatcggcaacccccacgactggggccaggtggtcatccgcttg
caacgcggccaggtccgccgtcgggacaacctgctgcggcatctggtggacatccagtat
acgcgcaatgacatcgacttccggcgggggaccttccgggtgcggggggacacggtggac
gtgtttcccgcttatcaggacacggccatccgcattgagttctggggggatgagatcgac
cgcctggtggagttcgaccccctgaccggggaggtgctccgcctgcacgaggcggtggag
atctacccggccaagcacttcgtgactcccgaagagaagctgcgtcgggccatcgcctcc
atcgaacaggagctccaccagcgcctggaggagctgcgggcccagggcaagctcctggag
gccgagcggctccgccagcgcaccctctatgacctggagatgctgcgggaggtgggctac
tgccacggcatcgagaactactcccggcacctggacggacgggccccgggggagcccccg
tggacgctgctggattacttccccgacgatttcctggtggtgatcgacgagtcccacatg
accatcccccagctgcgggggatgtatcacggggatcgctcccgcaaggagacgctggtg
gaatacggcttccgcctcccctcggccctggacaaccggcccctcaccttcgaggagttc
gaacagcgggtccgccaggtgatcttcatgtccgccacccccggtccgtatgagctggag
aaatccgagcaggtcgtcgagcagctgatccggcccaccgggatcctggaccccatcgtg
gaggtgcgcccgacgaaggggcagatcgaggacctcatcggcgagatccgccgacgggtc
gcccggggggagcgagccctggtcaccaccctgaccaagcgcctggccgaggagctctcg
gattacctcaacgagatgggcatccgcacccactacctgcacgcggacatcgacaccctg
gagcgcgtggagatcctgcgggatctccgcctgggggtttacgatgtggtggtggggatc
aacctgctgcgggagggattggacctcccggaggtctccctggtggcggtgctggacgcg
gaccaggagggtttcctgcgcagcgagaccgcgttgatccagaccatcgggcgggcggcc
cgccatgtgaacgggacggccatcctctacgccgaccggatcaccgaatccatgcgccgg
gccatcgaggagaccaaccggcgacgggcgatccaggaggcttataatcgcgcccatggc
atcgagccccgctctatcgtgaaggcggtgcgggacctcacggatcgggttcgggagatg
gtggcggaggaggccgggacggccggacggccgccggcgatgccgaaggaggagctgcag
cggctgatccgcgccctggagaaggagatgaagcgggccgcccaggccctggagttcgag
aaagccgccgccctgcgggaccagatcttcgagctgcgggagcagctgcgggtgatcgag
ctggcggagaccccgccggaggcgaggatccggcgcctggtggagatggagcagccggag
gaggagccggattccgaaacccccgtcgcgcccgcgccgccggggcggcgcaaccgcccc
cgccgcaagggatag
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