Thermoflexus hugenholtzii: KNN16_06100
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Entry
KNN16_06100 CDS
T07254
Name
(GenBank) HD domain-containing protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
thug
Thermoflexus hugenholtzii
Pathway
thug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNN16_06100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thug03019
]
KNN16_06100
Enzymes [BR:
thug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
KNN16_06100
Messenger RNA biogenesis [BR:
thug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KNN16_06100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
HD
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
QWK11861
LinkDB
All DBs
Position
complement(1336820..1338325)
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AA seq
501 aa
AA seq
DB search
MEAAARVLLEALKRLLEEGPYEARLVGGAVRDRLIGREPNDFDAVVVGPALSLARVLADA
VDGAFYILDARREFGRVVWRSPQGRRFYVDLARREGDSWEEDLRRRDFTINAMMVEIEAF
LRPEGFVPFDPLGGLEDLRTGWLRPCAPDAFRRDPVRTLRAVRFEAELGLRLTPEAEAAL
VEAVPRLFLAAAERIRDELVKILLIPPAVRSLRRMEALGLLERVLPEVASLRGLTQSPPH
VWDAYAHTLRAVAAMERLLGSWAESPELQDLPPRWAEVEAAMAPWRERLQSRWEEEVAVG
RPRRALLLLSALLHDIGKAGTRTVEPDGRIRFIGHEAIGARWAADRLEALRFSGDEIEEV
ETLVRHHMRPHGMARRLTPRGIYRFFREVGERGVDLALLALADTLAVWGPTLTEDIWGPR
LRVAQALWQAFFEAPERFVRVVPLIRGEDLLAMGVPEGPQIGRLLEAIREAQAAGEVTTR
EEALALARRLIDEAGESEARG
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggcggcgcgcgtcttgctggaggccctgaagcgtctcctggaggagggtccc
tatgaggcccggctggtgggcggggccgtgcgggatcgcctcatcggccgggagcccaac
gacttcgacgcggtggtggtcggcccggcgctgtccctcgcccgcgtcctggcggacgcc
gtggacggggccttctacatcctggacgcccgccgggagttcgggcgcgtggtctggcgg
agcccgcagggccgccggttctacgtggatctggcccggcgggagggggattcctgggag
gaggatctccggcgccgggatttcacgatcaacgccatgatggtcgagatcgaggccttc
ctgcgcccggaggggttcgtccccttcgatccgctgggcgggctggaggatctgcggacg
gggtggctgcgcccctgcgcccccgatgccttccgacgcgacccggtgcggacgctgcgg
gcggtccgcttcgaagcggagctcgggctccggctgacgccggaggcggaagcggccctc
gtggaagccgtcccccggcttttcctcgccgccgcggaacggatccgcgatgagctggtc
aagatcctcctcatccccccggccgtccggagccttcgccggatggaagccctggggctc
ctggagcgggtcctgcccgaggtggcgagcctgcggggcctgacgcagagccctccccat
gtgtgggacgcctatgcgcacaccctgcgggccgtggcggcgatggaacggctgctgggg
tcgtgggcggagtctcccgagctgcaggatctgccgccccgatgggcggaggtggaggcc
gcgatggcgccctggcgggagcgcctgcagtcccgctgggaggaggaagtggccgtcggg
cgcccccggcgggcgctgttgcttctttccgccctgcttcacgacatcgggaaggccgga
acccgcaccgtcgagccggacggacggattcgcttcatcggccacgaggccatcggggca
aggtgggcggccgatcggctggaggcgctccgcttcagcggcgatgagatcgaggaggtg
gagaccctggttcgtcatcacatgcggccccacgggatggcgcgaaggctcaccccgcgg
gggatctaccggttcttccgggaggtgggggagcgaggggtggaccttgcgttgctggcc
ctggcggacaccctggccgtgtgggggcccacgctgacggaggacatctggggccctcgg
cttcgggtggcccaggccctctggcaggcgttcttcgaggccccggagcggttcgtccgc
gtggttcccctgatccggggggaggatctcctggccatgggcgtgccggagggcccccag
atcggccgccttctggaagccatccgggaggcccaggcggccggcgaggtcaccacccgg
gaggaagccctggccctcgcccgccgcctgatcgacgaggccggggaatcggaagcgcgt
ggataa
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